Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CMOL_RS05810 Genome accession   NZ_CP059597
Coordinates   1145817..1146110 (-) Length   97 a.a.
NCBI ID   WP_200281994.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140817..1151110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS05790 (CMOL_1145) ctsE 1141702..1143258 (-) 1557 WP_239820088.1 GspE/PulE family protein Machinery gene
  CMOL_RS05795 (CMOL_1146) ctsX 1143251..1143835 (-) 585 WP_239820089.1 transformation system protein Machinery gene
  CMOL_RS05800 (CMOL_1147) ctsP 1143832..1144428 (-) 597 WP_239820090.1 ATP-binding protein Machinery gene
  CMOL_RS05805 (CMOL_1148) ctsD 1144421..1145839 (-) 1419 WP_239820091.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CMOL_RS05810 (CMOL_1149) ctsR 1145817..1146110 (-) 294 WP_200281994.1 transformation system protein Machinery gene
  CMOL_RS05815 (CMOL_1150) nifJ 1146162..1149725 (-) 3564 WP_200281976.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CMOL_RS05820 (CMOL_1151) - 1149803..1150450 (-) 648 WP_239820092.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11440.20 Da        Isoelectric Point: 6.9760

>NTDB_id=471202 CMOL_RS05810 WP_200281994.1 1145817..1146110(-) (ctsR) [Campylobacter sp. RM10537]
MAQDDFEEYFRSLNSKCNIDLENLQNPFLNPTFEKIKKLNIAAIMLNQVKINNHWYKKGDIIDGALIVEINKKDIVLQYD
ALNFKINFKTNDKINIY

Nucleotide


Download         Length: 294 bp        

>NTDB_id=471202 CMOL_RS05810 WP_200281994.1 1145817..1146110(-) (ctsR) [Campylobacter sp. RM10537]
ATGGCACAAGATGATTTTGAAGAGTATTTTAGATCTTTAAATTCCAAATGCAATATAGATCTTGAAAACCTTCAAAATCC
TTTTTTAAATCCTACTTTTGAAAAGATCAAAAAACTCAATATAGCAGCTATCATGTTAAATCAAGTAAAAATCAATAATC
ATTGGTATAAAAAAGGTGATATAATCGATGGTGCCTTAATTGTTGAAATCAATAAAAAAGATATTGTATTGCAATATGAT
GCTTTAAATTTTAAAATCAATTTTAAAACCAATGATAAAATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

56.842

97.938

0.557