Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CMOL_RS05790 Genome accession   NZ_CP059597
Coordinates   1141702..1143258 (-) Length   518 a.a.
NCBI ID   WP_239820088.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136702..1148258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS05760 (CMOL_1141) - 1137350..1138114 (+) 765 WP_239820082.1 TIGR02757 family protein -
  CMOL_RS05765 (CMOL_1142) - 1138096..1138860 (+) 765 WP_239820083.1 TSUP family transporter -
  CMOL_RS05770 - 1138974..1139369 (-) 396 WP_239820084.1 hypothetical protein -
  CMOL_RS05775 - 1139579..1140127 (-) 549 WP_239820085.1 hypothetical protein -
  CMOL_RS05780 - 1140073..1140429 (-) 357 WP_239820086.1 glycosyltransferase -
  CMOL_RS05785 (CMOL_1144) ctsF 1140537..1141715 (-) 1179 WP_239820087.1 type II secretion system F family protein Machinery gene
  CMOL_RS05790 (CMOL_1145) ctsE 1141702..1143258 (-) 1557 WP_239820088.1 GspE/PulE family protein Machinery gene
  CMOL_RS05795 (CMOL_1146) ctsX 1143251..1143835 (-) 585 WP_239820089.1 transformation system protein Machinery gene
  CMOL_RS05800 (CMOL_1147) ctsP 1143832..1144428 (-) 597 WP_239820090.1 ATP-binding protein Machinery gene
  CMOL_RS05805 (CMOL_1148) ctsD 1144421..1145839 (-) 1419 WP_239820091.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CMOL_RS05810 (CMOL_1149) ctsR 1145817..1146110 (-) 294 WP_200281994.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 59469.45 Da        Isoelectric Point: 6.6947

>NTDB_id=471198 CMOL_RS05790 WP_239820088.1 1141702..1143258(-) (ctsE) [Campylobacter sp. RM10537]
MIDQNLFEDYLSQKINLEQIYQNFSIKSEDFLKALASFLNIKFIELNEFDEKFCENFPFSILLKFEVLPIKNENILYIVG
AKPCSLELLEQIKIFTDIEKIEIALADEFKIIKFLNILRIKDELKKLSIKLKLEWQEGVKENQTCISQIFYFILEEALKI
NTSDIHIESRINDALIRFRVDGILKKFVNLEKDIYEALIFHIKFLAHLNVAESRKAQDGSFELEFKENKYDFRISSLPLS
NGESVVIRILKHNKEILELEKLNLGKINIDILKKALKSPHGMILLTGPTGSGKSTTLYACLNVLKSIEKKIITAEDPIEY
KMPLIQQILLNPKAGFEFNNALRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMKAKP
YLIASALSVIIAQRLVRKLCPRCKQKSNQYKQFQGNFFEAKGCEYCHQSGFIGRELVGECLKVDDEISQAIRENKSKNEI
LALAKNKGFQTMFEQGLQKAREGITSIDELLRVLNETL

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=471198 CMOL_RS05790 WP_239820088.1 1141702..1143258(-) (ctsE) [Campylobacter sp. RM10537]
ATGATTGATCAAAATTTATTTGAAGATTATTTAAGTCAAAAAATAAATCTTGAACAAATTTATCAAAATTTTAGTATAAA
AAGTGAAGATTTTTTAAAAGCTTTAGCATCTTTTTTAAATATAAAATTTATTGAGTTAAATGAATTTGATGAGAAATTTT
GTGAAAATTTTCCCTTTAGTATTCTTTTAAAATTTGAAGTTTTACCAATAAAAAATGAAAATATTTTATATATAGTCGGT
GCAAAACCTTGCTCTTTAGAGCTTTTAGAGCAAATAAAAATTTTTACAGATATTGAAAAAATAGAAATTGCACTTGCTGA
TGAGTTTAAAATTATAAAATTTTTAAATATTCTTCGTATTAAAGATGAGCTAAAAAAACTAAGTATTAAACTTAAACTTG
AATGGCAAGAAGGTGTAAAAGAAAATCAAACTTGTATCAGTCAAATTTTTTACTTTATCCTTGAAGAAGCACTTAAAATA
AATACAAGTGATATTCATATAGAATCTAGAATAAATGATGCCTTGATAAGATTTAGAGTGGATGGGATTTTAAAAAAATT
TGTTAATCTTGAAAAAGATATTTATGAAGCTTTGATTTTTCATATTAAATTTTTAGCACATTTAAATGTAGCAGAATCAA
GAAAAGCCCAAGATGGTAGTTTTGAACTTGAATTTAAAGAAAATAAATATGATTTTAGAATTTCATCATTGCCTCTATCA
AATGGTGAAAGTGTAGTTATAAGGATCTTAAAGCATAATAAAGAAATTTTAGAACTTGAAAAATTAAATTTAGGAAAGAT
TAATATTGATATTTTGAAAAAAGCTTTAAAATCACCCCATGGAATGATTTTGCTAACAGGTCCAACTGGAAGTGGTAAAA
GTACTACTTTATACGCTTGTTTGAATGTGTTAAAGAGTATAGAAAAGAAAATCATTACAGCAGAAGATCCTATAGAATAT
AAAATGCCTCTAATTCAGCAAATTTTACTTAATCCTAAGGCAGGATTTGAATTTAATAATGCCTTAAGAGCGATTTTAAG
GCAAGATCCTGATATTATTATGATAGGTGAGATTAGAGATGAAGAAAGCCTTGATATAGCCTTGAAAGCTTCTTTAACTG
GACATTTGCTTTTAAGTACCTTGCATACAAATGATGCACTTTCGACTATAGATAGACTTTTAGATATGAAAGCAAAACCT
TATTTAATCGCTTCTGCACTTAGCGTGATTATCGCACAACGTTTGGTTAGAAAGCTTTGTCCAAGGTGCAAACAAAAGAG
TAATCAATACAAACAATTTCAAGGGAATTTTTTTGAAGCTAAAGGTTGTGAATATTGTCATCAAAGCGGATTTATAGGTA
GAGAATTAGTTGGTGAGTGCTTAAAGGTAGATGATGAGATTTCTCAAGCTATTCGAGAAAATAAAAGCAAAAATGAAATT
TTAGCACTTGCAAAAAATAAAGGTTTTCAAACTATGTTTGAACAAGGTTTGCAAAAAGCAAGAGAAGGTATTACAAGTAT
AGATGAGCTCTTGAGGGTTTTAAATGAAACTTTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(153-418)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(28-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

69.08

98.649

0.681
  pilB Vibrio cholerae strain A1552

37.066

100

0.371
  pilB Vibrio campbellii strain DS40M4

35.055

100

0.367