Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IXO685_RS10525 Genome accession   NZ_CP059590
Coordinates   2230249..2231769 (+) Length   506 a.a.
NCBI ID   WP_075244457.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain IXO685     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2231863..2238154 2230249..2231769 flank 94


Gene organization within MGE regions


Location: 2230249..2238154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO685_RS10525 (IXO685_0010515) comM 2230249..2231769 (+) 1521 WP_075244457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IXO685_RS10530 (IXO685_0010520) - 2231863..2233240 (-) 1378 Protein_2011 IS5 family transposase -
  IXO685_RS10535 (IXO685_0010525) - 2233379..2234419 (-) 1041 Protein_2012 IS5-like element ISXoo5 family transposase -
  IXO685_RS10540 (IXO685_0010530) - 2234508..2234958 (+) 451 Protein_2013 IS1595-like element ISXo5 family transposase -
  IXO685_RS10545 (IXO685_0010535) - 2234988..2235989 (-) 1002 Protein_2014 IS256 family transposase -
  IXO685_RS10550 (IXO685_0010540) - 2235996..2236961 (-) 966 WP_109181928.1 IS1595-like element ISXo5 family transposase -
  IXO685_RS10555 (IXO685_0010545) - 2237050..2237238 (-) 189 Protein_2016 transposase -
  IXO685_RS10560 (IXO685_0010550) - 2237327..2238154 (+) 828 Protein_2017 IS3 family transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54120.91 Da        Isoelectric Point: 8.2767

>NTDB_id=471139 IXO685_RS10525 WP_075244457.1 2230249..2231769(+) (comM) [Xanthomonas oryzae pv. oryzae strain IXO685]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAEHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSTSVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=471139 IXO685_RS10525 WP_075244457.1 2230249..2231769(+) (comM) [Xanthomonas oryzae pv. oryzae strain IXO685]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TTTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGAGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCACCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462