Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IXO644_RS01015 Genome accession   NZ_CP059587
Coordinates   206988..208508 (-) Length   506 a.a.
NCBI ID   WP_011257184.1    Uniprot ID   A0A854CKZ6
Organism   Xanthomonas oryzae pv. oryzae strain IXO644     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 199360..206894 206988..208508 flank 94


Gene organization within MGE regions


Location: 199360..208508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO644_RS00970 (IXO644_000970) - 199360..200187 (-) 828 Protein_188 IS3 family transposase -
  IXO644_RS00975 (IXO644_000975) - 200276..200464 (+) 189 Protein_189 transposase -
  IXO644_RS00980 (IXO644_000980) - 200553..201518 (+) 966 Protein_190 IS1595-like element ISXo5 family transposase -
  IXO644_RS00985 (IXO644_000985) - 201525..202526 (+) 1002 Protein_191 IS256-like element IS1113 family transposase -
  IXO644_RS00990 (IXO644_000990) - 202556..203006 (-) 451 Protein_192 IS1595-like element ISXo5 family transposase -
  IXO644_RS00995 (IXO644_000995) - 203095..204135 (+) 1041 Protein_193 IS5-like element ISXoo5 family transposase -
  IXO644_RS01000 (IXO644_001000) - 204274..205230 (+) 957 Protein_194 IS5 family transposase -
  IXO644_RS01005 (IXO644_001005) - 205369..206400 (-) 1032 Protein_195 IS701-like element ISXo15 family transposase -
  IXO644_RS01010 (IXO644_001010) - 206472..206894 (+) 423 Protein_196 IS5/IS1182 family transposase -
  IXO644_RS01015 (IXO644_001015) comM 206988..208508 (-) 1521 WP_011257184.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54090.89 Da        Isoelectric Point: 8.2767

>NTDB_id=471073 IXO644_RS01015 WP_011257184.1 206988..208508(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO644]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAEHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=471073 IXO644_RS01015 WP_011257184.1 206988..208508(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO644]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TTTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGAGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854CKZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462