Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HBNCFIEN_RS13045 Genome accession   NZ_CP059576
Coordinates   3001955..3003466 (+) Length   503 a.a.
NCBI ID   WP_182391507.1    Uniprot ID   A0A7G4RJ64
Organism   Legionella sp. PC997     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2996955..3008466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS13015 (HBNCFIEN_02629) - 2998748..2999380 (+) 633 WP_255464219.1 TVP38/TMEM64 family protein -
  HBNCFIEN_RS13020 (HBNCFIEN_02630) - 2999319..3000155 (-) 837 WP_182391503.1 aminotransferase class IV -
  HBNCFIEN_RS13025 (HBNCFIEN_02631) - 3000219..3000416 (-) 198 WP_182391504.1 PA3496 family putative envelope integrity protein -
  HBNCFIEN_RS13030 (HBNCFIEN_02632) - 3000641..3001219 (+) 579 WP_182391505.1 5-formyltetrahydrofolate cyclo-ligase -
  HBNCFIEN_RS13035 (HBNCFIEN_02633) - 3001227..3001568 (-) 342 WP_003635241.1 P-II family nitrogen regulator -
  HBNCFIEN_RS13040 (HBNCFIEN_02634) - 3001631..3001888 (+) 258 WP_182391506.1 accessory factor UbiK family protein -
  HBNCFIEN_RS13045 (HBNCFIEN_02635) comM 3001955..3003466 (+) 1512 WP_182391507.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HBNCFIEN_RS13050 (HBNCFIEN_02636) - 3003583..3004890 (-) 1308 WP_182391508.1 glycosyltransferase family 87 protein -
  HBNCFIEN_RS13055 (HBNCFIEN_02637) - 3004953..3005855 (-) 903 WP_182391509.1 aspartate carbamoyltransferase catalytic subunit -
  HBNCFIEN_RS13060 (HBNCFIEN_02638) ruvX 3005980..3006399 (-) 420 WP_182391510.1 Holliday junction resolvase RuvX -
  HBNCFIEN_RS13065 (HBNCFIEN_02639) - 3006392..3006955 (-) 564 WP_182391511.1 YqgE/AlgH family protein -
  HBNCFIEN_RS13070 (HBNCFIEN_02640) - 3007035..3007775 (-) 741 WP_182391512.1 type II/III secretion system protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54803.12 Da        Isoelectric Point: 8.1645

>NTDB_id=470919 HBNCFIEN_RS13045 WP_182391507.1 3001955..3003466(+) (comM) [Legionella sp. PC997]
MNLAFTKTRSTVGILAQPVSVEVHLSNGLPGFTIVGLAETAVKESKDRVRSAIINSQFEFPCRRITVNLGPADLPKIGSG
FDLPIALGILAASDQIPQNQLADHEFIAELALSGELRGISAIIPAVLAAHKSQSLLIIASANAHEAALTGYQNIYSANNL
REVCSYLCQGTSLHALPPKPESCVRPYTMDWSDIKGQFHAKKAMEIAACGGHSILLSGAPGSGKTMLAKRFNTLLPPLSE
TQALECVVINSIRGKLPDFSQWRSPPFRAPHHTASPASLVGGGNPPKPGEISLAHHGVLFLDELPEFSRHVLETLRQPLE
SGTVCISRAAAQIEYPAQFQFIAAMNPCPCGQWGNPQANCLCSSDRIKRYHAKISAPLLDRIDMHITVQALTQEELVAPN
NNPLKQSELIREQVIQARTIQVERQNCLNAYLSANTCEKICALGSEEQDFLHQSMLQFKLSARGYHRLLKVARTIADMNQ
SILVSKIHLQQALSFRHALRTPV

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=470919 HBNCFIEN_RS13045 WP_182391507.1 3001955..3003466(+) (comM) [Legionella sp. PC997]
ATGAATCTTGCGTTTACTAAAACACGTAGTACCGTTGGGATATTGGCACAACCCGTGTCAGTAGAAGTTCATTTATCAAA
TGGATTGCCTGGATTTACAATAGTGGGGCTGGCCGAAACCGCAGTGAAAGAAAGTAAGGATCGAGTCCGCTCCGCGATTA
TTAATAGCCAGTTCGAATTCCCCTGCCGCAGAATCACAGTGAACTTGGGACCTGCTGACTTACCCAAAATTGGGAGTGGT
TTTGATTTACCCATCGCTCTTGGAATTCTTGCTGCATCAGATCAAATTCCTCAAAATCAATTGGCCGATCATGAATTTAT
CGCAGAACTTGCCTTAAGTGGAGAGCTTCGAGGGATTTCTGCTATTATTCCTGCGGTCTTAGCAGCACATAAAAGCCAAA
GTTTACTTATTATTGCCAGTGCAAATGCTCATGAAGCGGCACTAACCGGCTATCAAAACATCTATAGTGCTAATAATTTG
CGCGAAGTGTGTAGCTACCTTTGTCAAGGAACTTCATTACACGCGTTACCACCCAAGCCGGAATCATGCGTCAGACCATA
CACGATGGATTGGTCTGACATCAAAGGACAATTTCATGCAAAAAAAGCAATGGAAATTGCAGCATGTGGTGGTCACAGCA
TCTTGCTAAGTGGTGCTCCTGGAAGTGGTAAAACGATGTTAGCAAAACGGTTTAATACCTTATTACCTCCACTATCTGAA
ACACAGGCCTTAGAATGTGTGGTCATCAATTCCATACGGGGTAAATTACCTGATTTTAGCCAATGGCGCTCACCTCCTTT
TCGCGCCCCCCATCATACTGCGTCCCCTGCATCTCTAGTAGGTGGAGGAAACCCACCTAAGCCGGGAGAGATCTCTCTAG
CACATCATGGGGTTTTGTTTCTTGATGAGTTACCTGAATTTAGCCGCCATGTTCTAGAAACTTTAAGACAACCGCTTGAG
TCAGGAACCGTTTGCATTTCCAGAGCCGCTGCACAAATCGAATATCCCGCTCAATTTCAGTTCATCGCAGCAATGAATCC
TTGTCCTTGCGGGCAATGGGGAAATCCACAAGCAAACTGTTTATGCAGTTCTGATCGTATTAAACGTTATCATGCAAAGA
TTTCAGCACCTTTATTAGATCGGATTGATATGCATATCACGGTCCAAGCATTAACTCAGGAAGAATTGGTTGCTCCGAAT
AATAATCCCCTAAAACAAAGTGAATTAATCCGAGAACAAGTTATCCAAGCACGAACTATACAGGTAGAACGACAAAATTG
CCTCAATGCCTATTTAAGCGCTAATACTTGTGAAAAAATTTGTGCGTTAGGATCTGAAGAACAAGATTTTTTACATCAAT
CGATGCTGCAATTCAAACTTTCTGCTCGAGGATATCATCGCTTATTGAAAGTTGCACGTACGATAGCCGACATGAATCAA
AGCATCCTGGTTTCTAAAATCCATTTACAACAAGCATTATCCTTTAGACATGCCTTACGCACTCCTGTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G4RJ64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

76.892

99.801

0.767
  comM Legionella pneumophila strain ERS1305867

76.892

99.801

0.767
  comM Haemophilus influenzae Rd KW20

50

100

0.501
  comM Vibrio cholerae strain A1552

49.597

98.608

0.489
  comM Vibrio campbellii strain DS40M4

48.996

99.006

0.485
  comM Glaesserella parasuis strain SC1401

46.293

99.205

0.459
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.145

98.608

0.425