Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H3L91_RS02260 Genome accession   NZ_CP059571
Coordinates   450158..451372 (+) Length   404 a.a.
NCBI ID   WP_040658635.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 445158..456372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS02240 (H3L91_02240) secB 445202..445666 (+) 465 WP_007341833.1 protein-export chaperone SecB -
  H3L91_RS02245 (H3L91_02245) - 445784..446107 (-) 324 WP_007341834.1 type II toxin-antitoxin system MqsA family antitoxin -
  H3L91_RS02250 (H3L91_02250) - 446656..447873 (+) 1218 WP_007341836.1 MFS transporter -
  H3L91_RS02255 (H3L91_02255) - 448110..449954 (+) 1845 WP_007341838.1 ABC transporter ATP-binding protein -
  H3L91_RS02260 (H3L91_02260) dprA 450158..451372 (+) 1215 WP_040658635.1 DNA-processing protein DprA Machinery gene
  H3L91_RS02265 (H3L91_02265) - 451466..451921 (+) 456 WP_007341840.1 DUF494 domain-containing protein -
  H3L91_RS02270 (H3L91_02270) topA 452042..454348 (+) 2307 WP_007341842.1 type I DNA topoisomerase -
  H3L91_RS02275 (H3L91_02275) - 454528..455595 (+) 1068 WP_244958476.1 DUF4349 domain-containing protein -
  H3L91_RS02280 (H3L91_02280) rsmD 455592..456164 (+) 573 WP_007341844.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 42588.44 Da        Isoelectric Point: 6.2425

>NTDB_id=470858 H3L91_RS02260 WP_040658635.1 450158..451372(+) (dprA) [Neisseria bacilliformis strain DSM 23338]
MPQPNEREAWLKLALMPHIGAETFLQLVKHFGTAADAWRAGLDDARPFLPRKQAQQAWAARRGEAERAAEAALRWEAGEG
CRLLLLCDDDFPALLGEGMTPPPLLFLRGNAELLRRPAAAIVGSRHATPQAERIAHDFGRALAQQGIAVVSGMAAGIDTA
AHRGALQGAGGTIAVWGTGIDRIYPPSNKNLAYEIAEHGLIVSEFPLGTRPLAGNFPRRNRIIAALAQAVLVVEAALESG
SLITARLAAEMGREVMALPGSIDNPHSKGCHKLIKEGAKLTESLEDILSECPQLLPNGAASSYAINKDAQRGVQTASNAK
QRPSENIPAAAPTERPSEQTAAQAQTGGADANPLLAAMGYSPVHPDALAESLGRPAADIFAELLELELEGRVAAAAGGCY
QRVG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=470858 H3L91_RS02260 WP_040658635.1 450158..451372(+) (dprA) [Neisseria bacilliformis strain DSM 23338]
ATGCCTCAGCCAAACGAACGCGAAGCCTGGCTCAAACTCGCCCTGATGCCCCACATCGGCGCGGAAACCTTTTTGCAGCT
GGTCAAACACTTCGGCACCGCCGCCGACGCATGGCGGGCGGGTTTGGACGACGCGCGCCCCTTCCTCCCGCGCAAACAGG
CGCAGCAGGCATGGGCGGCACGGCGCGGCGAGGCCGAACGCGCCGCCGAAGCCGCCCTGCGCTGGGAAGCGGGCGAGGGC
TGCCGCCTGCTGCTGTTGTGCGACGACGACTTCCCCGCCCTGCTCGGCGAAGGCATGACCCCGCCGCCCCTGCTGTTTCT
GCGCGGCAACGCCGAACTGCTGCGCCGCCCCGCCGCCGCCATCGTCGGCAGCCGCCACGCCACCCCGCAGGCCGAACGCA
TCGCGCACGACTTCGGCCGCGCCCTCGCGCAGCAGGGCATCGCCGTCGTCTCCGGCATGGCCGCCGGCATCGACACCGCC
GCCCATCGCGGCGCATTGCAGGGCGCGGGCGGCACCATAGCCGTGTGGGGCACCGGCATCGACCGCATCTACCCGCCGTC
CAACAAAAACCTCGCCTATGAAATCGCCGAACACGGCCTGATTGTCAGCGAGTTCCCGCTCGGCACCCGCCCGCTGGCCG
GCAACTTCCCGCGCCGCAACCGCATCATCGCCGCCCTCGCGCAGGCCGTGCTGGTGGTGGAAGCCGCCCTCGAATCCGGC
TCGCTCATCACCGCGCGTCTGGCGGCGGAAATGGGGCGCGAAGTGATGGCCCTGCCCGGCTCCATCGACAACCCGCACAG
CAAAGGCTGCCACAAGCTCATCAAAGAAGGCGCGAAACTCACCGAATCGCTGGAAGACATTCTCAGCGAATGCCCGCAAC
TGTTGCCAAACGGCGCGGCTTCATCATATGCTATAAATAAAGACGCGCAGCGCGGTGTTCAGACGGCCTCAAACGCCAAA
CAGAGGCCGTCTGAAAACATACCCGCCGCCGCGCCGACGGAGCGGCCGTCCGAACAAACGGCGGCGCAGGCGCAGACAGG
CGGCGCGGACGCAAACCCGCTGCTCGCGGCCATGGGTTACAGCCCCGTCCACCCCGACGCGCTGGCCGAGAGCCTCGGCC
GCCCCGCCGCCGACATCTTCGCCGAACTGCTCGAACTCGAACTCGAAGGCCGCGTCGCCGCAGCGGCCGGCGGCTGCTAC
CAGCGGGTCGGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-281)

DprA winged helix domain (DprA_WH)

(341-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

64.198

100

0.644
  dprA Neisseria meningitidis MC58

64.198

100

0.644
  dprA Neisseria gonorrhoeae MS11

64.677

99.505

0.644
  dprA Neisseria gonorrhoeae strain FA1090

63.951

100

0.641
  dprA Vibrio cholerae strain A1552

38.5

99.01

0.381
  dprA Vibrio campbellii strain DS40M4

37.5

99.01

0.371