Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H3L95_RS12665 Genome accession   NZ_CP059566
Coordinates   2671988..2673484 (+) Length   498 a.a.
NCBI ID   WP_003757161.1    Uniprot ID   C6M3H0
Organism   Neisseria sicca strain DSM 17713     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2666988..2678484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS12640 (H3L95_12640) nqrM 2667236..2667457 (-) 222 WP_003757168.1 (Na+)-NQR maturation NqrM -
  H3L95_RS12645 (H3L95_12645) - 2667496..2668545 (-) 1050 WP_046398801.1 FAD:protein FMN transferase -
  H3L95_RS12650 (H3L95_12650) metK 2668939..2670108 (+) 1170 WP_009312787.1 methionine adenosyltransferase -
  H3L95_RS14130 - 2670259..2670366 (-) 108 Protein_2465 IS5/IS1182 family transposase -
  H3L95_RS12655 (H3L95_12655) - 2670390..2671454 (+) 1065 WP_003757164.1 DUF1176 domain-containing protein -
  H3L95_RS12660 (H3L95_12660) - 2671654..2671974 (+) 321 WP_003757162.1 accessory factor UbiK family protein -
  H3L95_RS12665 (H3L95_12665) comM 2671988..2673484 (+) 1497 WP_003757161.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H3L95_RS14280 - 2673495..2673685 (-) 191 Protein_2469 hypothetical protein -
  H3L95_RS12670 (H3L95_12670) - 2673942..2675036 (+) 1095 WP_003757158.1 SPOR domain-containing protein -
  H3L95_RS12675 (H3L95_12675) - 2675047..2675691 (+) 645 WP_003757157.1 thiol:disulfide interchange protein DsbA/DsbL -
  H3L95_RS12680 (H3L95_12680) - 2675906..2676730 (+) 825 WP_040668248.1 undecaprenyl-diphosphate phosphatase -
  H3L95_RS12685 (H3L95_12685) - 2676984..2677331 (-) 348 WP_003763387.1 hypothetical protein -
  H3L95_RS12690 (H3L95_12690) - 2677338..2677529 (-) 192 WP_003763364.1 zinc-finger domain-containing protein -
  H3L95_RS12695 (H3L95_12695) - 2677693..2678187 (+) 495 WP_003757153.1 DMP19 family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53535.61 Da        Isoelectric Point: 7.8459

>NTDB_id=470754 H3L95_RS12665 WP_003757161.1 2671988..2673484(+) (comM) [Neisseria sicca strain DSM 17713]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAPEKLAQYEFAGELALSGMLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTACQVPQRSSENAKLPDLIDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFNRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAVVLARVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVLKAVSFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=470754 H3L95_RS12665 WP_003757161.1 2671988..2673484(+) (comM) [Neisseria sicca strain DSM 17713]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCTCATTTCAATATCGTCGGATTGCCCGATACCGAAGTCAAAGAAAGCCGCGACCGTGTGCGCGCCGCCATCA
TCCAAAGCGGTTTCGACTTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAATCGGGACGT
TTCGACCTGCCGATTGCGCTGGGCATCCTCGCCGCATCCGGACAAATCGCACCCGAAAAGCTCGCGCAATACGAGTTTGC
CGGCGAATTGGCGCTTTCCGGCATGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCGGGAC
GTTCTTTCGTCTTGCCGCAGGAAAACGCAGAGCAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGTGCGCGTTCGTTA
GGTGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCACAAACCGCCTGCCAAGTCCCGCAGAGGTCGTCTGAAAA
CGCCAAACTGCCCGACCTCATCGATGTCAAAGGTCAACATACCGCCCGCCTTGCTTTGGAAATCGCCGCCGCGGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACGGGCAAATCCATGCTTTCCCAACGGCTGCCCGGCATTCTGCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCGTTGCGTTCGCTCCTGCCCAATCATCAGCAACAACTCGACAGCCACCGGCC
TTTCCGCAGCCCGCACCATAGTGCCAGCTCGGCAGCCATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAGCTGCCCGAGTTCAACCGCAAAGTTTTGGAAGTTTTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCCGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCTGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTTGCGCGTTACCGCAGTA
AAATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGGGAAAGCAGCGCCGTCGTGTTGGCGCGCGTGATCGCCGCCCGCGACAAACAATACGCGCGGCAGGGCAAAGT
CAACGCCGCCTTGAGCGTCAGTGAACTCGACACGTCCGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCAGCCTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGAATCATGCGCGTGGCGCGTACGTTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCATGTTTTGAAAGCCGTCAGCTTCCGCCGCGCGTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M3H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.586

100

0.54
  comM Vibrio campbellii strain DS40M4

52.4

100

0.526
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Haemophilus influenzae Rd KW20

49.203

100

0.496
  comM Legionella pneumophila str. Paris

47.515

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.515

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.438