Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   H3L95_RS03065 Genome accession   NZ_CP059566
Coordinates   618972..619463 (+) Length   163 a.a.
NCBI ID   WP_003756733.1    Uniprot ID   C6M2Y8
Organism   Neisseria sicca strain DSM 17713     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 613972..624463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS03040 (H3L95_03040) dnaB 614390..615796 (+) 1407 WP_003764236.1 replicative DNA helicase -
  H3L95_RS03045 (H3L95_03045) pilH 615954..616649 (+) 696 WP_003756725.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H3L95_RS03050 (H3L95_03050) pilV 616661..617389 (+) 729 WP_052296540.1 type IV pilus modification protein PilV -
  H3L95_RS03055 (H3L95_03055) - 617389..618366 (+) 978 WP_003756728.1 PilW family protein -
  H3L95_RS03060 (H3L95_03060) pilK 618345..618959 (+) 615 WP_003756730.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H3L95_RS03065 (H3L95_03065) pilL 618972..619463 (+) 492 WP_003756733.1 PilX family type IV pilin Machinery gene
  H3L95_RS03070 (H3L95_03070) - 620058..622070 (-) 2013 WP_182096202.1 calcium-binding protein -
  H3L95_RS03075 (H3L95_03075) - 622431..623540 (+) 1110 WP_206597875.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  H3L95_RS03080 (H3L95_03080) fghA 623549..624376 (+) 828 WP_003756743.1 S-formylglutathione hydrolase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18028.70 Da        Isoelectric Point: 9.5442

>NTDB_id=470726 H3L95_RS03065 WP_003756733.1 618972..619463(+) (pilL) [Neisseria sicca strain DSM 17713]
MNTSITKFQGFTLVEMLIVIAIIGILSTIAYPSYIHYIERGYQSQAHAELVIINNSLKTKLVKNPALKMKDEIEGDAGFF
KTYQATSEVAAKYDFSGAMKDKDAKHSRAYYLFATPKSGTNYKLSVWMDSLGNAYKCTDAESAKAKLTTKNGNTGCEPVS
NKK

Nucleotide


Download         Length: 492 bp        

>NTDB_id=470726 H3L95_RS03065 WP_003756733.1 618972..619463(+) (pilL) [Neisseria sicca strain DSM 17713]
ATGAATACGTCTATCACTAAATTTCAAGGGTTTACGCTGGTTGAGATGCTGATTGTCATTGCTATTATCGGCATCCTCAG
CACTATCGCTTACCCTTCCTATATCCATTACATTGAACGCGGCTATCAATCTCAGGCGCATGCTGAATTGGTTATCATCA
ATAATTCCTTGAAAACCAAACTGGTTAAAAACCCTGCCCTCAAAATGAAAGATGAAATTGAGGGAGATGCGGGTTTTTTT
AAGACCTATCAGGCTACATCAGAAGTTGCTGCTAAGTATGATTTCAGCGGCGCAATGAAAGATAAGGACGCTAAACACAG
CAGGGCTTATTATCTTTTTGCGACCCCGAAAAGCGGGACGAATTACAAACTTTCCGTCTGGATGGACAGTTTGGGCAATG
CCTACAAATGTACCGATGCTGAATCAGCCAAAGCCAAGTTAACCACTAAAAACGGTAATACAGGTTGCGAACCTGTTTCA
AATAAAAAGTAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(37-163)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M2Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

50.625

98.16

0.497
  pilX Neisseria meningitidis 8013

48.101

96.933

0.466