Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H3L97_RS02615 Genome accession   NZ_CP059564
Coordinates   519824..521044 (+) Length   406 a.a.
NCBI ID   WP_097114916.1    Uniprot ID   -
Organism   Alysiella filiformis strain DSM 16848     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 511451..519533 519824..521044 flank 291


Gene organization within MGE regions


Location: 511451..521044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L97_RS02565 (H3L97_02565) - 511451..512179 (-) 729 WP_097114908.1 hypothetical protein -
  H3L97_RS02570 (H3L97_02570) lpxC 512456..513379 (+) 924 WP_097114909.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  H3L97_RS02575 (H3L97_02575) - 513384..514049 (-) 666 WP_097114910.1 hypothetical protein -
  H3L97_RS02580 (H3L97_02580) - 514102..514875 (+) 774 WP_097114911.1 methyltransferase -
  H3L97_RS02590 (H3L97_02590) - 515121..515573 (-) 453 WP_218839696.1 DUF441 domain-containing protein -
  H3L97_RS02595 (H3L97_02595) - 515573..516547 (-) 975 WP_097114913.1 polyprenyl synthetase family protein -
  H3L97_RS02600 (H3L97_02600) - 516873..517526 (+) 654 WP_097114929.1 ATP-binding cassette domain-containing protein -
  H3L97_RS02605 (H3L97_02605) ftsX 517523..518437 (+) 915 WP_097114914.1 permease-like cell division protein FtsX -
  H3L97_RS02610 (H3L97_02610) - 518817..519533 (-) 717 WP_097114915.1 hypothetical protein -
  H3L97_RS02615 (H3L97_02615) dprA 519824..521044 (+) 1221 WP_097114916.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43951.39 Da        Isoelectric Point: 6.8518

>NTDB_id=470665 H3L97_RS02615 WP_097114916.1 519824..521044(+) (dprA) [Alysiella filiformis strain DSM 16848]
MQHDSERHAWIQLALTPHIGAESFLNLIQHYGSASQALRASSSEIAQLAHNGKKAAAHWHDTHKAQAATEAALLWEQHAD
CRLLLLCDDDYPMMLTEGLTAPPILFVRGNVALLHKPSVSIVGSRHATPQALRIARDFALSLSERGIPIISGMASGIDTA
AHEGALQHSGSTIAVWGTGIDRIYPPQNEYLARQIAEQGAIVSEFPLGTRPVAGNFPRRNRLIAALGRATLVVEAALESG
SLITARQASEMGREVMAIPSSIDNPHAKGCHKLIKEGAKLVESLEDILQECPSLLAKSSTALSTALSTRCQKITSPEKSP
KMLPEKPLITPPLNNFVDKTVDNFGDNLVDKRLLPVLEKIAHTPTHPDFIANELNLPTADVYAALLELEMLGEIAPMSGG
RYQRIK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=470665 H3L97_RS02615 WP_097114916.1 519824..521044(+) (dprA) [Alysiella filiformis strain DSM 16848]
ATGCAGCACGATTCCGAACGCCACGCATGGATACAACTCGCGCTTACCCCCCATATTGGCGCGGAAAGTTTCCTCAATTT
GATTCAACATTATGGTTCAGCCAGCCAAGCCCTGCGCGCCAGCAGCAGCGAAATCGCCCAACTTGCCCACAATGGCAAAA
AAGCCGCCGCCCATTGGCATGATACCCACAAAGCACAAGCCGCTACCGAAGCGGCTTTGTTGTGGGAGCAACATGCCGAT
TGTCGCCTGTTGCTGTTGTGCGATGACGATTACCCAATGATGCTCACCGAAGGCTTAACCGCGCCCCCCATTTTGTTTGT
GCGTGGCAATGTGGCTTTGTTGCACAAACCTTCGGTGAGCATAGTGGGCAGCCGCCACGCCACACCGCAGGCTTTGCGGA
TTGCGCGGGATTTTGCTTTGTCGTTGAGCGAACGGGGCATTCCCATTATTTCGGGCATGGCAAGCGGCATAGACACCGCC
GCCCACGAGGGGGCATTACAACATTCAGGCAGCACCATTGCCGTGTGGGGAACGGGCATAGACCGCATTTATCCACCACA
AAACGAATATTTGGCACGACAAATTGCCGAACAAGGCGCAATCGTGTCCGAATTTCCTTTGGGAACGCGCCCTGTGGCAG
GCAATTTTCCGCGCCGCAACCGCTTGATTGCCGCTTTGGGACGCGCGACATTGGTGGTGGAGGCGGCATTGGAAAGCGGC
TCGCTGATTACCGCGCGGCAAGCCAGTGAAATGGGGCGCGAAGTGATGGCAATTCCCAGCAGCATAGACAATCCACACGC
CAAAGGTTGCCACAAATTGATTAAAGAAGGGGCTAAATTGGTGGAAAGTTTGGAAGACATTTTGCAAGAATGCCCCAGTT
TGTTGGCAAAATCATCAACAGCTTTATCCACAGCATTATCCACAAGGTGTCAGAAAATTACATCGCCCGAAAAATCGCCC
AAAATGCTGCCTGAAAAACCTTTAATCACACCCCCATTGAATAACTTTGTGGACAAAACTGTGGATAATTTTGGGGACAA
TTTGGTGGATAAACGCCTTTTGCCCGTGTTGGAAAAAATTGCCCATACCCCCACACACCCTGATTTCATCGCCAATGAGC
TGAATTTGCCCACTGCCGATGTGTATGCGGCTTTGTTGGAATTGGAAATGTTGGGGGAAATTGCGCCGATGTCAGGCGGG
CGTTATCAGCGCATCAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-282)

DprA winged helix domain (DprA_WH)

(355-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.513

100

0.601
  dprA Neisseria meningitidis MC58

58.513

100

0.601
  dprA Neisseria gonorrhoeae MS11

57.143

100

0.571
  dprA Neisseria gonorrhoeae strain FA1090

56.897

100

0.569