Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H3L98_RS06130 Genome accession   NZ_CP059563
Coordinates   1138422..1139915 (+) Length   497 a.a.
NCBI ID   WP_027021219.1    Uniprot ID   A0AAE9HSK6
Organism   Conchiformibius steedae strain DSM 2580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1133422..1144915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L98_RS06110 (H3L98_06115) - 1133516..1136044 (+) 2529 WP_169733445.1 DUF4132 domain-containing protein -
  H3L98_RS06115 (H3L98_06120) - 1136098..1136895 (-) 798 WP_027021217.1 3'-5' exonuclease -
  H3L98_RS06120 (H3L98_06125) - 1137082..1137906 (+) 825 WP_027021218.1 DsbC family protein -
  H3L98_RS06125 (H3L98_06130) - 1138015..1138416 (+) 402 WP_051531955.1 accessory factor UbiK family protein -
  H3L98_RS06130 (H3L98_06135) comM 1138422..1139915 (+) 1494 WP_027021219.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H3L98_RS06135 (H3L98_06140) - 1140053..1141189 (+) 1137 WP_027021220.1 SPOR domain-containing protein -
  H3L98_RS06140 (H3L98_06145) - 1141316..1142023 (+) 708 WP_034332985.1 thiol:disulfide interchange protein DsbA/DsbL -
  H3L98_RS06145 (H3L98_06150) - 1142099..1142926 (+) 828 WP_027021222.1 undecaprenyl-diphosphate phosphatase -
  H3L98_RS06150 (H3L98_06155) rpsT 1142977..1143240 (-) 264 WP_027021223.1 30S ribosomal protein S20 -
  H3L98_RS06155 (H3L98_06160) prmA 1143437..1144327 (+) 891 WP_027021224.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53100.97 Da        Isoelectric Point: 8.5247

>NTDB_id=470652 H3L98_RS06130 WP_027021219.1 1138422..1139915(+) (comM) [Conchiformibius steedae strain DSM 2580]
MSFALVNSRALCGTHAPLVEVETHLANGLPQFNIVGLPDTEVKESRDRVRAAIVQSGFDFPAKKITVNLAPADLPKESGR
FDLPVALGILAASGQVNAAALADYEFAGELALSGRLRAVRGALAMVWQGHLAGRAFVLPAENAEEAALMDAVSVYGAADL
RAVVAHLNGQTPLSRACAVRDDVVQLAPLADLREVKGQHTARFALEVAAAGAHSLLMMGPPGTGKSMLAQRLPSILPPLS
DAERIEVWTVRSLLPRHDHVLPQGRPFRSPHHSASAAALVGGGSDPRPGEISLAHRGILFLDELPEFDRRVLEMLREPLE
TGVIHISRASRQAQFPANFQLVAAMNPCPCGYLGHPSKPCRCTPEAVRRYRDKISGPLLDRIDLTIEVPALPAADLTHAQ
AGESSAAVAERVAAARLRQHNRQGKTNAALSPSELDGIADISAEARNSLAQMLEKLSLSARSFHRILRVARTVADLSGET
TVSRAHVLRAIGLRRAL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=470652 H3L98_RS06130 WP_027021219.1 1138422..1139915(+) (comM) [Conchiformibius steedae strain DSM 2580]
ATGTCGTTTGCGCTGGTAAACAGCCGCGCCTTATGCGGTACGCACGCGCCTTTGGTGGAAGTGGAAACGCATTTGGCAAA
CGGTTTGCCGCAGTTCAATATCGTGGGCTTGCCCGATACGGAAGTGAAGGAAAGCCGCGACAGGGTGCGGGCGGCGATTG
TGCAAAGCGGCTTTGATTTTCCTGCCAAAAAAATCACGGTCAACCTTGCGCCTGCCGATTTGCCGAAAGAATCGGGGCGT
TTTGACCTGCCTGTGGCGTTGGGGATTTTGGCGGCTTCGGGGCAGGTAAACGCAGCGGCATTGGCAGATTACGAATTTGC
GGGCGAGTTGGCGTTGTCGGGACGGCTGCGGGCGGTGCGCGGGGCGTTGGCAATGGTGTGGCAGGGGCATTTGGCGGGAC
GGGCGTTTGTGTTACCCGCCGAAAACGCCGAAGAAGCTGCGTTAATGGACGCGGTAAGCGTGTACGGTGCGGCGGATTTA
CGCGCAGTCGTGGCACATTTAAACGGACAAACGCCCTTATCCCGCGCCTGTGCGGTGCGCGATGATGTGGTACAGCTTGC
GCCCTTGGCGGATTTGCGAGAAGTCAAAGGGCAACACACGGCGCGTTTTGCTCTGGAAGTGGCGGCAGCGGGCGCACACA
GCCTGCTGATGATGGGACCCCCAGGGACGGGAAAATCCATGTTGGCACAACGTTTGCCCAGTATTTTGCCGCCTTTAAGC
GATGCCGAACGCATTGAAGTGTGGACAGTGCGTTCGCTGCTGCCGCGCCACGACCATGTTTTGCCGCAGGGACGACCCTT
CCGCAGCCCGCATCACAGCGCCAGTGCTGCTGCCTTGGTGGGTGGGGGTTCCGACCCGCGCCCTGGCGAAATTTCCTTGG
CGCACAGGGGGATATTGTTTTTAGACGAATTGCCCGAATTTGACCGCCGTGTATTGGAAATGTTGCGCGAGCCTTTGGAA
ACGGGCGTGATTCACATTTCCCGCGCCAGTCGTCAGGCACAGTTTCCTGCGAATTTTCAGTTGGTTGCTGCCATGAATCC
CTGTCCGTGCGGTTATTTGGGGCATCCGTCCAAACCCTGCCGCTGTACGCCTGAAGCGGTGCGCCGTTACCGCGACAAAA
TTTCAGGACCTTTATTGGACCGCATTGATTTAACCATTGAAGTGCCTGCCTTGCCCGCTGCCGATTTAACCCACGCCCAA
GCAGGCGAAAGCAGCGCGGCGGTGGCAGAGCGCGTGGCAGCGGCGCGTTTGCGCCAGCACAACCGTCAAGGTAAAACCAA
TGCCGCGTTGTCGCCGTCCGAATTAGACGGCATCGCCGACATCAGTGCCGAAGCCCGCAACAGTTTGGCGCAGATGTTGG
AAAAATTATCCTTATCGGCGCGTAGTTTCCACCGTATTTTGCGTGTGGCGCGTACCGTTGCCGATTTAAGCGGCGAAACC
ACCGTATCCCGTGCCCATGTATTACGCGCCATTGGCTTGCGCCGCGCCCTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.703

100

0.519
  comM Vibrio campbellii strain DS40M4

51.102

100

0.513
  comM Haemophilus influenzae Rd KW20

50.4

100

0.507
  comM Glaesserella parasuis strain SC1401

49.299

100

0.495
  comM Legionella pneumophila str. Paris

46.047

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.047

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.713

100

0.441