Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H2677_RS14535 Genome accession   NZ_CP059558
Coordinates   3136406..3137893 (+) Length   495 a.a.
NCBI ID   WP_212638814.1    Uniprot ID   A0AAX1MH90
Organism   Acinetobacter junii strain YR7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3131406..3142893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS14510 (H2677_14505) ribD 3132267..3133367 (-) 1101 WP_212638813.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  H2677_RS14515 (H2677_14510) nrdR 3133380..3133844 (-) 465 WP_004957298.1 transcriptional regulator NrdR -
  H2677_RS14520 (H2677_14515) - 3134015..3135427 (-) 1413 WP_004917056.1 ammonium transporter -
  H2677_RS14525 (H2677_14520) glnK 3135495..3135833 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  H2677_RS14530 (H2677_14525) - 3136109..3136336 (+) 228 WP_004917059.1 accessory factor UbiK family protein -
  H2677_RS14535 (H2677_14530) comM 3136406..3137893 (+) 1488 WP_212638814.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H2677_RS14540 (H2677_14535) - 3137929..3138717 (-) 789 WP_004957280.1 TorF family putative porin -
  H2677_RS14545 (H2677_14540) - 3139063..3139833 (-) 771 WP_004917065.1 TorF family putative porin -
  H2677_RS14550 (H2677_14545) - 3140575..3141903 (+) 1329 WP_004957264.1 OprD family outer membrane porin -
  H2677_RS14555 (H2677_14550) ppa 3142008..3142535 (-) 528 WP_004917070.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54290.97 Da        Isoelectric Point: 7.7615

>NTDB_id=470609 H2677_RS14535 WP_212638814.1 3136406..3137893(+) (comM) [Acinetobacter junii strain YR7]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEVNQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDPKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDIIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=470609 H2677_RS14535 WP_212638814.1 3136406..3137893(+) (comM) [Acinetobacter junii strain YR7]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTGTTGGGGCTACACGCCCCTCAAATCGAGGTCGAAGTGCATATTAGTTC
TGGCCTACCATCTTTAACCATCGTGGGTTTACCTGAAGCAGCCGTCCGAGAAAGTAAAGATCGCGTTCGATCTGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGCTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTGCCAATTGCATTGGGGATTTTAATCGCTTCAGGTCAGCTTCCTGAAAATTGTACGGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGTAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGTAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCTGATGTTAAAGGTCAACTCCGTCCTCGCCGCGCATTAGAAATTGCGGCTGCAGGAGGTCATTCAT
TACTCTTTAAGGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAACGCCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCTGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCGCCTGAAAGTATTCAACGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATTGATCTGCATATCGATGTTCCACCCTTGCAAGCTCAAGAGCTACAAGACCCAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAACAACAGATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATGGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGACATAATATCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.406

100

0.517
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Vibrio campbellii strain DS40M4

49.697

100

0.497
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

47.984

100

0.481
  comM Legionella pneumophila strain ERS1305867

47.984

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.461