Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H2789_RS17230 Genome accession   NZ_CP059549
Coordinates   3646834..3648318 (+) Length   494 a.a.
NCBI ID   WP_347019051.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3641834..3653318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS17205 (H2789_17190) ribD 3642752..3643837 (-) 1086 WP_132068560.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  H2789_RS17210 (H2789_17195) nrdR 3643853..3644311 (-) 459 WP_003654416.1 transcriptional regulator NrdR -
  H2789_RS17215 (H2789_17200) - 3644473..3645867 (-) 1395 WP_347019050.1 ammonium transporter -
  H2789_RS17220 (H2789_17205) glnK 3645924..3646262 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  H2789_RS17225 (H2789_17210) - 3646541..3646768 (+) 228 WP_003654412.1 accessory factor UbiK family protein -
  H2789_RS17230 (H2789_17215) comM 3646834..3648318 (+) 1485 WP_347019051.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H2789_RS17235 (H2789_17220) - 3648424..3648963 (+) 540 WP_347019052.1 NADPH-dependent FMN reductase -
  H2789_RS17240 (H2789_17225) - 3649011..3649073 (+) 63 WP_245356115.1 hypothetical protein -
  H2789_RS17245 (H2789_17230) - 3649165..3649977 (-) 813 WP_045126191.1 TorF family putative porin -
  H2789_RS17250 - 3650034..3650204 (-) 171 WP_306304708.1 hypothetical protein -
  H2789_RS17255 (H2789_17235) - 3650940..3652220 (+) 1281 WP_045437195.1 OprD family outer membrane porin -
  H2789_RS17260 (H2789_17240) ppa 3652327..3652851 (-) 525 WP_003654399.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54318.24 Da        Isoelectric Point: 7.7217

>NTDB_id=470516 H2789_RS17230 WP_347019051.1 3646834..3648318(+) (comM) [Acinetobacter calcoaceticus strain NCIMB13260]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCAEDFEFIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPDFKCYPVSHL
KEVCEHFLGTKSLSSVEPTATSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTSHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPVE
DSSSVRQRVIYAYEQQIQRQNCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SSHLTEALSYRGNS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=470516 H2789_RS17230 WP_347019051.1 3646834..3648318(+) (comM) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTGGGTTTACATGCACCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTAGGCCTAGCCGAAGCGGCAGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCGATTA
TTAACAGTGGATTTCAATTTCCGACTAAACGACTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCAATTGCTTTAGGTATTTTAATTGCCTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTTAT
TGGAGAGTTAGCACTTGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCAATGGCTTGTCAACAAGCCAAGC
ATAAAATGCTTTTACCGCTTGATAATAGTCAGGATATTAGCCACTTACCTGACTTTAAATGTTATCCAGTGAGTCACTTA
AAAGAAGTCTGTGAACATTTTTTGGGCACAAAGTCTCTATCTTCGGTTGAGCCTACGGCCACTTCAAACCAAATGCCTTA
TAAATTTGACCTTGCAGATGTAAAAGGTCAGTTACGCCCACGCCGTGCACTCGAAATTGCTGCTGCTGGAGGGCACTCTT
TACTTTTTAAAGGACCACCCGGCACAGGTAAAACTTTACTCGCCTCAAGGCTTCCTTCAATTTTACCGCCTCTGTCTAAT
CAAGAAACACTTGAAGTTGCTAGCATTTACTCTATTTCAAATACATCACATACTTTTGGTCAGCGACCATTTCGAGCGCC
CCATCATACAGCATCAGCGATTGCACTCGTTGGGGGCGGTTCTCACCCTAAACCGGGCGAAATTACATTATCGCATTTAG
GAGTACTTTTTTTAGATGAGCTCCCCGAGTTTGATAGAAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAGGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACTTATCCGGCTAACTTCCAATTGATTGCGGCGATGAACCCATGTCCATG
CGGCTATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCACCTGAGAGTATTAAGCGCTATCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGATGTGCCACCGTTAAAGGCCCAAGAGCTACAAGATCCAACGCCTGTTGAA
GATTCAAGTAGTGTTCGACAACGTGTGATTTATGCTTATGAACAACAGATTCAAAGACAAAATTGTTTAAATCAGGCGCT
TTCGCCGAAGCAGCTAGAACAACATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTAA
ATTTATCCGCCCGCGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTAGCTCAAAGTGAAGTGATTCAA
AGCTCTCACCTTACAGAAGCATTATCCTATCGAGGAAATAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.899

100

0.5
  comM Glaesserella parasuis strain SC1401

49.4

100

0.5
  comM Legionella pneumophila str. Paris

49.598

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.598

100

0.5
  comM Haemophilus influenzae Rd KW20

49.098

100

0.496
  comM Vibrio campbellii strain DS40M4

47.879

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.468