Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H2785_RS16640 Genome accession   NZ_CP059546
Coordinates   3570455..3571942 (+) Length   495 a.a.
NCBI ID   WP_145849827.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3565455..3576942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS16615 (H2785_16620) ribD 3566371..3567456 (-) 1086 WP_223069703.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  H2785_RS16620 (H2785_16625) nrdR 3567472..3567930 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  H2785_RS16625 (H2785_16630) - 3568089..3569486 (-) 1398 WP_000738520.1 ammonium transporter -
  H2785_RS16630 (H2785_16635) glnK 3569544..3569882 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  H2785_RS16635 (H2785_16640) - 3570162..3570389 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  H2785_RS16640 (H2785_16645) comM 3570455..3571942 (+) 1488 WP_145849827.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H2785_RS16645 (H2785_16650) - 3571957..3573391 (-) 1435 Protein_3255 PLP-dependent aminotransferase family protein -
  H2785_RS16650 (H2785_16655) - 3573503..3574279 (+) 777 WP_000845030.1 aldolase -
  H2785_RS16655 (H2785_16660) - 3574295..3575173 (+) 879 WP_223069705.1 dihydrodipicolinate synthase family protein -
  H2785_RS16660 (H2785_16665) - 3575216..3576028 (-) 813 WP_033853774.1 TorF family putative porin -
  H2785_RS17900 - 3576085..3576255 (-) 171 WP_225545956.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54551.47 Da        Isoelectric Point: 7.4015

>NTDB_id=470377 H2785_RS16640 WP_145849827.1 3570455..3571942(+) (comM) [Acinetobacter baumannii strain 10_4]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAYAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
RETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=470377 H2785_RS16640 WP_145849827.1 3570455..3571942(+) (comM) [Acinetobacter baumannii strain 10_4]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCAGTTAACCATTTA
AAAGAGGTATGCGAGCACTTTTTAGGCACACAAAAGCTAGCTTATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CGAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTAGTTGGGGGCGGCTCACACCCCAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAACGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471