Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H2N97_RS17850 Genome accession   NZ_CP059497
Coordinates   3591322..3592011 (-) Length   229 a.a.
NCBI ID   WP_217425079.1    Uniprot ID   -
Organism   Bacillus velezensis strain JSRB 08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586322..3597011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS17815 (H2N97_17815) fliW 3586413..3586844 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  H2N97_RS17820 (H2N97_17820) - 3586874..3587443 (-) 570 WP_017418818.1 DUF6470 family protein -
  H2N97_RS17825 (H2N97_17825) flgL 3587534..3588451 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  H2N97_RS17830 (H2N97_17830) flgK 3588463..3589980 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  H2N97_RS17835 (H2N97_17835) - 3589996..3590478 (-) 483 WP_003151394.1 flagellar protein FlgN -
  H2N97_RS17840 (H2N97_17840) flgM 3590493..3590759 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2N97_RS17845 (H2N97_17845) - 3590829..3591248 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  H2N97_RS17850 (H2N97_17850) comFC 3591322..3592011 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  H2N97_RS17855 (H2N97_17855) - 3592017..3592301 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  H2N97_RS17860 (H2N97_17860) comFA 3592359..3593744 (-) 1386 WP_134986672.1 DEAD/DEAH box helicase Machinery gene
  H2N97_RS17865 (H2N97_17865) - 3593852..3594700 (-) 849 WP_015418336.1 DegV family protein -
  H2N97_RS17870 (H2N97_17870) degU 3594798..3595487 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H2N97_RS17875 (H2N97_17875) degS 3595564..3596727 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25360.07 Da        Isoelectric Point: 8.4880

>NTDB_id=470239 H2N97_RS17850 WP_217425079.1 3591322..3592011(-) (comFC) [Bacillus velezensis strain JSRB 08]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=470239 H2N97_RS17850 WP_217425079.1 3591322..3592011(-) (comFC) [Bacillus velezensis strain JSRB 08]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598