Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H2N97_RS15765 Genome accession   NZ_CP059497
Coordinates   3184176..3184820 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain JSRB 08     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179176..3189820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS15730 (H2N97_15730) - 3180361..3180792 (+) 432 WP_087634939.1 Na(+)/H(+) antiporter subunit B -
  H2N97_RS15735 (H2N97_15735) - 3180792..3181133 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  H2N97_RS15740 (H2N97_15740) - 3181126..3182607 (+) 1482 WP_017419418.1 Na+/H+ antiporter subunit D -
  H2N97_RS15745 (H2N97_15745) - 3182613..3183089 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  H2N97_RS15750 (H2N97_15750) - 3183089..3183373 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  H2N97_RS15755 (H2N97_15755) mnhG 3183357..3183731 (+) 375 WP_017419421.1 monovalent cation/H(+) antiporter subunit G -
  H2N97_RS15760 (H2N97_15760) - 3183771..3184154 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  H2N97_RS15765 (H2N97_15765) comA 3184176..3184820 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  H2N97_RS15770 (H2N97_15770) comP 3184901..3187210 (-) 2310 WP_087634938.1 histidine kinase Regulator
  H2N97_RS15775 (H2N97_15775) - 3187230..3187406 (-) 177 WP_087634937.1 competence pheromone ComX -
  H2N97_RS15780 (H2N97_15780) comQ 3187406..3188344 (-) 939 WP_271243340.1 class 1 isoprenoid biosynthesis enzyme Regulator
  H2N97_RS15785 (H2N97_15785) degQ 3188475..3188615 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  H2N97_RS15790 (H2N97_15790) - 3189080..3189421 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=470233 H2N97_RS15765 WP_014418762.1 3184176..3184820(-) (comA) [Bacillus velezensis strain JSRB 08]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=470233 H2N97_RS15765 WP_014418762.1 3184176..3184820(-) (comA) [Bacillus velezensis strain JSRB 08]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86