Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JSQ77_RS02390 Genome accession   NZ_CP069712
Coordinates   502285..503409 (+) Length   374 a.a.
NCBI ID   WP_104696707.1    Uniprot ID   -
Organism   Escherichia coli strain EA13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 497285..508409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ77_RS02365 (JSQ77_02370) mscL 497411..497821 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  JSQ77_RS02370 (JSQ77_02375) trkA 497951..499327 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JSQ77_RS02375 (JSQ77_02380) rsmB 499349..500638 (-) 1290 WP_000744778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JSQ77_RS02380 (JSQ77_02385) fmt 500684..501631 (-) 948 WP_000004473.1 methionyl-tRNA formyltransferase -
  JSQ77_RS02385 (JSQ77_02390) def 501646..502155 (-) 510 WP_000114984.1 peptide deformylase -
  JSQ77_RS02390 (JSQ77_02395) dprA 502285..503409 (+) 1125 WP_104696707.1 DNA-protecting protein DprA Machinery gene
  JSQ77_RS02395 (JSQ77_02400) smg 503381..503854 (+) 474 WP_000460680.1 DUF494 family protein Smg -
  JSQ77_RS02400 (JSQ77_02405) yrdD 503883..504425 (+) 543 WP_001129722.1 type I DNA topoisomerase -
  JSQ77_RS02405 (JSQ77_02410) tsaC 504430..505002 (+) 573 WP_001301412.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JSQ77_RS02410 (JSQ77_02415) aroE 505007..505825 (+) 819 WP_000451243.1 shikimate dehydrogenase -
  JSQ77_RS02415 (JSQ77_02420) yrdB 505822..506079 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  JSQ77_RS02420 (JSQ77_02425) yrdA 506055..506609 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40906.87 Da        Isoelectric Point: 6.3122

>NTDB_id=470076 JSQ77_RS02390 WP_104696707.1 502285..503409(+) (dprA) [Escherichia coli strain EA13]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
VYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=470076 JSQ77_RS02390 WP_104696707.1 502285..503409(+) (dprA) [Escherichia coli strain EA13]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
GTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.238

98.663

0.476
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.355

82.888

0.409
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Haemophilus influenzae Rd KW20

44.807

90.107

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39