Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H2R00_RS14825 Genome accession   NZ_CP059494
Coordinates   2992933..2993223 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987933..2998223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS14810 - 2988143..2989468 (-) 1326 WP_154999875.1 G5 and 3D domain-containing protein -
  H2R00_RS14815 - 2989585..2990352 (-) 768 WP_182069593.1 TatD family hydrolase -
  H2R00_RS14820 metG 2990437..2992425 (-) 1989 WP_182069595.1 methionine--tRNA ligase -
  H2R00_RS14825 abrB 2992933..2993223 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H2R00_RS14830 rsmI 2993273..2994151 (-) 879 WP_154999881.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H2R00_RS14835 - 2994126..2994419 (-) 294 WP_182069597.1 GIY-YIG nuclease family protein -
  H2R00_RS14840 - 2994406..2995149 (-) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H2R00_RS14845 yabA 2995214..2995576 (-) 363 WP_154999878.1 DNA replication initiation control protein YabA -
  H2R00_RS14850 - 2995591..2996418 (-) 828 WP_020449794.1 stage 0 sporulation family protein -
  H2R00_RS14855 holB 2996421..2997410 (-) 990 WP_182069599.1 DNA polymerase III subunit delta' -
  H2R00_RS14860 - 2997422..2997862 (-) 441 WP_003178158.1 YaaR family protein -
  H2R00_RS14865 - 2997874..2998203 (-) 330 WP_003178156.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=470076 H2R00_RS14825 WP_085959887.1 2992933..2993223(+) (abrB) [Bacillus haynesii strain P19]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=470076 H2R00_RS14825 WP_085959887.1 2992933..2993223(+) (abrB) [Bacillus haynesii strain P19]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938