Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JSQ43_RS08750 Genome accession   NZ_CP069709
Coordinates   1758980..1760407 (-) Length   475 a.a.
NCBI ID   WP_000980594.1    Uniprot ID   -
Organism   Escherichia coli strain EA7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1753980..1765407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ43_RS08720 (JSQ43_08720) yeeZ 1754035..1754859 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JSQ43_RS08725 (JSQ43_08725) yeeY 1754905..1755834 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  JSQ43_RS08730 (JSQ43_08730) yoeI 1756049..1756111 (+) 63 WP_010723108.1 membrane protein YoeI -
  JSQ43_RS08735 (JSQ43_08735) plaP 1756101..1757459 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JSQ43_RS08740 (JSQ43_08740) tsuA 1757638..1758696 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  JSQ43_RS08745 (JSQ43_08745) tsuB 1758710..1758937 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JSQ43_RS08750 (JSQ43_08750) sbcB 1758980..1760407 (-) 1428 WP_000980594.1 exodeoxyribonuclease I Machinery gene
  JSQ43_RS08755 (JSQ43_08755) dacD 1760616..1761782 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JSQ43_RS08760 (JSQ43_08760) sbmC 1761901..1762374 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  JSQ43_RS08765 (JSQ43_08765) yeeA 1762572..1763630 (+) 1059 WP_001200890.1 FUSC family protein -
  JSQ43_RS08770 (JSQ43_08770) tmaR 1763802..1764131 (+) 330 WP_000450409.1 DUF496 family protein -
  JSQ43_RS08775 (JSQ43_08775) - 1764232..1764414 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JSQ43_RS08780 (JSQ43_08780) - 1764468..1764614 (+) 147 Protein_1656 transposase domain-containing protein -
  JSQ43_RS08785 (JSQ43_08785) - 1764903..1764983 (-) 81 Protein_1657 hypothetical protein -
  JSQ43_RS08790 (JSQ43_08790) yeeW 1765029..1765223 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=469935 JSQ43_RS08750 WP_000980594.1 1758980..1760407(-) (sbcB) [Escherichia coli strain EA7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=469935 JSQ43_RS08750 WP_000980594.1 1758980..1760407(-) (sbcB) [Escherichia coli strain EA7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583