Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   H1D55_RS12925 Genome accession   NZ_CP059474
Coordinates   2768533..2769687 (-) Length   384 a.a.
NCBI ID   WP_000755112.1    Uniprot ID   A0A6F8TKE6
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2763533..2774687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS12905 - 2764694..2765344 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  H1D55_RS12910 - 2765450..2766370 (+) 921 WP_000084546.1 DMT family transporter -
  H1D55_RS12915 - 2766762..2767331 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  H1D55_RS12920 dprA 2767382..2768512 (-) 1131 WP_001984977.1 DNA-processing protein DprA Machinery gene
  H1D55_RS12925 tsaP 2768533..2769687 (-) 1155 WP_000755112.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H1D55_RS12930 def 2769810..2770340 (+) 531 WP_001196539.1 peptide deformylase -
  H1D55_RS12935 - 2770377..2770805 (+) 429 WP_000231976.1 DUF2946 family protein -
  H1D55_RS12940 - 2770878..2772992 (+) 2115 WP_001120684.1 TonB-dependent copper receptor -
  H1D55_RS12945 - 2773046..2773252 (+) 207 WP_000182542.1 hypothetical protein -
  H1D55_RS12950 - 2773322..2774536 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42424.31 Da        Isoelectric Point: 8.2461

>NTDB_id=469936 H1D55_RS12925 WP_000755112.1 2768533..2769687(-) (tsaP) [Acinetobacter baumannii strain M175-3]
MKKVFDGMVNFHALGIKKHLLALALCTGVTIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCNLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDSGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=469936 H1D55_RS12925 WP_000755112.1 2768533..2769687(-) (tsaP) [Acinetobacter baumannii strain M175-3]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCACAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAACCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTTCTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATAGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACCCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TKE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.177

100

0.982