Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   H1D55_RS02485 Genome accession   NZ_CP059474
Coordinates   531047..531748 (+) Length   233 a.a.
NCBI ID   WP_000594572.1    Uniprot ID   A0A009IN88
Organism   Acinetobacter baumannii strain M175-3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526047..536748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS02450 kdsB 526570..527331 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H1D55_RS02455 - 527343..528323 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H1D55_RS02460 - 528335..528676 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  H1D55_RS02465 - 528694..529467 (+) 774 WP_000497298.1 TatD family hydrolase -
  H1D55_RS02470 - 529505..530113 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H1D55_RS02475 - 530123..530677 (+) 555 WP_000841373.1 type II secretion system protein -
  H1D55_RS02480 xcpV 530667..531047 (+) 381 WP_042050087.1 type II secretion system minor pseudopilin GspI Machinery gene
  H1D55_RS02485 xcpW 531047..531748 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H1D55_RS02490 gspK 531748..532707 (+) 960 WP_000301461.1 type II secretion system minor pseudopilin GspK -
  H1D55_RS02495 - 532937..533533 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H1D55_RS02500 ung 533584..534297 (+) 714 WP_042050084.1 uracil-DNA glycosylase -
  H1D55_RS02505 - 534294..535418 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H1D55_RS02510 tadA 535425..535928 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  H1D55_RS02515 - 535998..536441 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.59 Da        Isoelectric Point: 9.5501

>NTDB_id=469910 H1D55_RS02485 WP_000594572.1 531047..531748(+) (xcpW) [Acinetobacter baumannii strain M175-3]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=469910 H1D55_RS02485 WP_000594572.1 531047..531748(+) (xcpW) [Acinetobacter baumannii strain M175-3]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAACTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991