Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   pbN1_RS09505 Genome accession   NZ_CP059467
Coordinates   2029755..2031248 (+) Length   497 a.a.
NCBI ID   WP_169202674.1    Uniprot ID   -
Organism   Aromatoleum bremense strain PbN1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2024755..2036248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pbN1_RS09480 (pbN1_19270) - 2025355..2026380 (+) 1026 WP_169202676.1 2-oxoacid:ferredoxin oxidoreductase subunit beta -
  pbN1_RS09485 (pbN1_19280) amt 2026520..2027872 (-) 1353 WP_210147707.1 ammonium transporter -
  pbN1_RS09490 (pbN1_19290) glnK 2027887..2028225 (-) 339 WP_011237608.1 P-II family nitrogen regulator -
  pbN1_RS09495 (pbN1_19300) - 2028275..2029006 (-) 732 WP_169202675.1 TorF family putative porin -
  pbN1_RS09500 (pbN1_19310) - 2029293..2029556 (+) 264 WP_169118775.1 accessory factor UbiK family protein -
  pbN1_RS09505 (pbN1_19320) comM 2029755..2031248 (+) 1494 WP_169202674.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  pbN1_RS09510 (pbN1_19330) - 2031394..2032578 (+) 1185 WP_169202673.1 multidrug effflux MFS transporter -
  pbN1_RS09515 (pbN1_19340) - 2032602..2033354 (-) 753 WP_169202672.1 ABC transporter ATP-binding protein -
  pbN1_RS09520 (pbN1_19350) - 2033344..2034120 (-) 777 WP_169202671.1 ABC transporter ATP-binding protein -
  pbN1_RS09525 (pbN1_19360) - 2034117..2035217 (-) 1101 WP_169202670.1 ABC transporter ATP-binding protein -
  pbN1_RS09530 (pbN1_19370) - 2035235..2036167 (-) 933 WP_169202669.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53010.77 Da        Isoelectric Point: 9.0322

>NTDB_id=469758 pbN1_RS09505 WP_169202674.1 2029755..2031248(+) (comM) [Aromatoleum bremense strain PbN1]
MSLALVRTRALVGLAAPEVTVEVHLANGLPAFNLVGLADTEVREARDRVRAAIVTSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIDAGALSRHEFVGELSLNGALRPVRGALAVALETAREGRALVLPVANADEAALAEGASVLAAASL
LAVCGHLNGHAALPRHPPPLRGRGGPPDADLAEVKGQLQARRALEVAAAGQHSLLLFGPPGTGKSMLARRLPGLLPRMEQ
AEAIESAAIQSIEGSFDVRHWGRRPYRAPHHSASAPALVGGGADPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GLVTVSRARRRAEFPARFQLVAAMNPCPCGHAGSGRCRCSPDQIARYRGKLSGPLLDRIDVIIEVPLLDQAEMLAQPAGE
SSEVVRSRVERAWARQRERQNEPNSRLSAGRVDALCAPDGEGRKLLAHAIERLNLSARGYHRILKVARTIADLADAPAIG
PAHLAEAIQYRRGLDAR

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=469758 pbN1_RS09505 WP_169202674.1 2029755..2031248(+) (comM) [Aromatoleum bremense strain PbN1]
ATGTCGCTGGCTCTCGTACGTACCCGCGCGCTGGTCGGCCTCGCCGCACCGGAAGTGACGGTCGAAGTCCACCTCGCCAA
TGGTCTGCCCGCTTTCAACCTCGTCGGGCTCGCCGATACCGAAGTGCGCGAGGCGCGCGATCGCGTGCGGGCCGCGATCG
TCACGTCGCAGTTCGAGTTCCCGCAGCGCCGCATCACCGTCAACCTCGCCCCCGCCGACCTGCCGAAAGAGGGCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCATCCGGCCAGATCGATGCGGGCGCGCTTTCGCGACACGAGTTCGT
CGGCGAGCTGTCGCTCAACGGCGCACTGCGGCCGGTGCGCGGCGCGCTCGCGGTCGCACTCGAAACCGCCCGCGAAGGGC
GGGCGCTGGTGCTGCCGGTCGCCAATGCGGACGAGGCGGCGCTCGCGGAGGGCGCGAGCGTGCTGGCCGCGGCGAGCCTG
CTCGCGGTGTGCGGGCACCTGAACGGGCACGCCGCGCTGCCGCGCCACCCGCCCCCGCTGCGTGGCCGGGGCGGGCCGCC
CGATGCCGATCTCGCCGAGGTCAAGGGGCAGCTCCAGGCGCGCCGGGCGCTCGAAGTCGCGGCGGCCGGCCAGCATTCGT
TGCTGCTGTTCGGGCCGCCGGGGACCGGCAAGTCGATGCTCGCGCGGCGCCTGCCCGGGCTGCTGCCACGCATGGAGCAG
GCCGAAGCGATCGAGAGTGCTGCGATCCAGTCGATCGAAGGGTCGTTCGACGTGCGGCACTGGGGACGCCGGCCGTATCG
CGCCCCGCACCACTCGGCTTCCGCGCCGGCGCTCGTCGGCGGCGGCGCCGACCCGCGGCCCGGCGAGATCAGCCTCGCAC
ACCACGGCGTGCTGTTTCTCGACGAGCTGCCCGAATTCGACCGGCGCGTGCTCGAGGCACTGCGCGAACCGCTCGAAACC
GGCCTCGTGACCGTGTCGCGCGCCCGGCGCCGCGCGGAATTCCCCGCCCGCTTCCAGCTCGTCGCGGCGATGAACCCCTG
CCCCTGCGGCCATGCCGGCAGCGGGCGTTGCCGCTGCTCGCCCGACCAGATCGCGCGCTACCGCGGCAAGCTGTCGGGGC
CGCTGCTCGATCGCATCGACGTCATCATCGAGGTGCCGCTGCTCGATCAGGCCGAGATGCTCGCGCAACCCGCCGGCGAA
TCGAGCGAAGTGGTGCGCTCACGTGTCGAGCGCGCGTGGGCGCGCCAGCGCGAGCGCCAGAATGAGCCGAACAGCCGGCT
GTCCGCGGGCCGCGTGGACGCGTTGTGCGCGCCCGACGGCGAAGGCCGCAAGCTCCTGGCCCATGCGATCGAGCGGTTGA
ATCTGTCGGCGCGGGGTTATCATCGCATCCTGAAAGTCGCCCGGACGATCGCCGATCTGGCCGATGCGCCCGCCATCGGT
CCGGCGCATCTGGCCGAGGCGATCCAGTATCGACGCGGGCTGGACGCGCGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.918

100

0.529
  comM Vibrio campbellii strain DS40M4

52.941

99.195

0.525
  comM Vibrio cholerae strain A1552

52.535

99.195

0.521
  comM Glaesserella parasuis strain SC1401

51.093

100

0.517
  comM Legionella pneumophila str. Paris

49.699

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.699

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

100

0.453