Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1D56_RS23460 Genome accession   NZ_CP059414
Coordinates   4495505..4496029 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain ENCL48212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4490505..4501029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D56_RS23435 (H1D56_23435) soxR 4490599..4491057 (-) 459 WP_180258962.1 redox-sensitive transcriptional activator SoxR -
  H1D56_RS23440 (H1D56_23440) soxS 4491156..4491482 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  H1D56_RS23445 (H1D56_23445) - 4491489..4493054 (-) 1566 WP_015570189.1 EAL domain-containing protein -
  H1D56_RS23450 (H1D56_23450) - 4493320..4494719 (-) 1400 Protein_4286 sensor domain-containing diguanylate cyclase -
  H1D56_RS23455 (H1D56_23455) - 4495163..4495444 (+) 282 WP_003860282.1 YjcB family protein -
  H1D56_RS23460 (H1D56_23460) ssb 4495505..4496029 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1D56_RS23465 (H1D56_23465) uvrA 4496281..4499103 (+) 2823 WP_045141429.1 excinuclease ABC subunit UvrA -
  H1D56_RS23470 (H1D56_23470) - 4499107..4499460 (-) 354 WP_045141430.1 MmcQ/YjbR family DNA-binding protein -
  H1D56_RS23475 (H1D56_23475) - 4499463..4499879 (-) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1D56_RS23480 (H1D56_23480) aphA 4499992..4500705 (-) 714 WP_045141431.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=469500 H1D56_RS23460 WP_003860284.1 4495505..4496029(-) (ssb) [Enterobacter hormaechei strain ENCL48212]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=469500 H1D56_RS23460 WP_003860284.1 4495505..4496029(-) (ssb) [Enterobacter hormaechei strain ENCL48212]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374