Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOLKNPGA_RS14405 Genome accession   NZ_CP059400
Coordinates   3289297..3290814 (+) Length   505 a.a.
NCBI ID   WP_182350550.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3284297..3295814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS14375 (FOLKNPGA_02922) - 3285606..3286313 (+) 708 WP_182350546.1 TVP38/TMEM64 family protein -
  FOLKNPGA_RS14380 (FOLKNPGA_02923) - 3286261..3287067 (-) 807 WP_182350547.1 aminotransferase class IV -
  FOLKNPGA_RS14385 (FOLKNPGA_02924) - 3287156..3287353 (-) 198 WP_182350548.1 PA3496 family putative envelope integrity protein -
  FOLKNPGA_RS14390 (FOLKNPGA_02925) - 3287572..3288150 (+) 579 WP_182350549.1 5-formyltetrahydrofolate cyclo-ligase -
  FOLKNPGA_RS14395 (FOLKNPGA_02926) - 3288273..3288614 (-) 342 WP_019233538.1 P-II family nitrogen regulator -
  FOLKNPGA_RS14400 (FOLKNPGA_02927) - 3288785..3289042 (+) 258 WP_019233537.1 accessory factor UbiK family protein -
  FOLKNPGA_RS14405 (FOLKNPGA_02928) comM 3289297..3290814 (+) 1518 WP_182350550.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOLKNPGA_RS14410 (FOLKNPGA_02929) - 3290899..3292197 (-) 1299 WP_182350551.1 glycosyltransferase family 87 protein -
  FOLKNPGA_RS14415 (FOLKNPGA_02930) - 3292379..3293275 (-) 897 WP_182350552.1 aspartate carbamoyltransferase catalytic subunit -
  FOLKNPGA_RS14420 (FOLKNPGA_02931) ruvX 3293449..3293868 (-) 420 WP_182350553.1 Holliday junction resolvase RuvX -
  FOLKNPGA_RS14425 (FOLKNPGA_02932) - 3293861..3294424 (-) 564 WP_182350554.1 YqgE/AlgH family protein -
  FOLKNPGA_RS14430 (FOLKNPGA_02933) - 3294508..3295254 (-) 747 WP_182350555.1 type II/III secretion system protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55000.39 Da        Isoelectric Point: 8.4917

>NTDB_id=469393 FOLKNPGA_RS14405 WP_182350550.1 3289297..3290814(+) (comM) [Legionella sp. PC1000]
MNLSFTKTRSTIGILAQPVSVEVHLSNGLPSFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASNQIPQNQLAYHEFIAELALSGELRGISAIIPSVLAAHKDQSLLIIATANAHEASLTGYQNIYSANNL
REVCSYLCQGTPLYSLPPKPESCSEPYPIDWSDIKGQFHAKKAMEIAACGGHSILLSGAPGSGKTMLAKRFNTLLPQLSE
KEALECVAINSIRGKLPDFSEWRSPPFRSPHHTASPVSLVGGGNPPKPGEISLAHHGVLFLDELPEFSRHVLETLRQPLE
AGTICISRAAAQTEFPAKFQLIAAMNPCPCGQWGNPQANCLCSPDRIKRYHAKISAPLLDRIDMHISVQALTQEELIAPN
INPKKQSDLIREKVIKVRSVQLERQKCLNASLSANSCEKICALGIQEQNFLRQSTLQLKLSARGYHRLLKVARTIADMSE
SSQVFQTHLQQALSFRHILSAPGTL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=469393 FOLKNPGA_RS14405 WP_182350550.1 3289297..3290814(+) (comM) [Legionella sp. PC1000]
ATGAATCTTTCGTTTACTAAAACGCGGAGTACGATTGGGATATTGGCACAGCCCGTGTCAGTAGAAGTACATTTATCAAA
TGGTTTGCCGAGCTTTACAATAGTAGGTCTTGCGGAAACCGCAGTGAAAGAAAGTAAGGATCGAGTTCGCTCTGCTATTA
TTAATAGCCAATTTGAATTTCCCTGCCGTAAAATTACGGTAAATTTGGGGCCTGCTGATTTACCTAAAACTGGAAGCGGT
TTTGATTTACCAATCGCTCTTGGCATTCTAGCCGCTTCCAACCAAATTCCCCAAAACCAATTAGCCTACCATGAATTTAT
AGCAGAACTTGCTTTAAGCGGTGAACTTCGAGGCATTTCCGCAATTATCCCCTCAGTATTAGCAGCTCATAAAGACCAAA
GTTTACTCATAATCGCCACTGCGAACGCTCATGAAGCATCTTTAACCGGTTATCAAAACATCTATAGCGCGAACAATTTA
CGTGAAGTATGCAGCTATCTTTGCCAAGGGACTCCCTTATATTCCTTACCGCCCAAGCCAGAATCTTGTTCGGAACCATA
CCCAATAGACTGGTCTGATATCAAAGGACAGTTTCACGCAAAAAAAGCAATGGAAATTGCCGCTTGTGGTGGACACAGTA
TTTTGTTAAGTGGTGCTCCTGGAAGCGGTAAAACCATGTTAGCAAAACGGTTTAATACACTCTTACCACAATTATCTGAA
AAAGAAGCTCTAGAATGTGTAGCCATCAATTCCATACGCGGTAAATTACCTGATTTTAGTGAATGGCGCTCCCCTCCTTT
CCGCTCTCCTCATCATACTGCCTCACCTGTATCTTTAGTGGGTGGGGGTAATCCTCCTAAACCAGGAGAAATCTCTCTGG
CACATCATGGAGTTTTGTTTCTTGATGAATTACCTGAATTTAGCCGGCACGTTCTAGAAACGTTAAGACAACCACTTGAA
GCAGGAACAATATGCATTTCAAGAGCCGCTGCACAAACAGAGTTCCCAGCTAAATTCCAGCTCATCGCAGCAATGAATCC
CTGTCCATGTGGGCAATGGGGTAATCCTCAGGCGAACTGTTTATGCAGTCCTGATCGAATTAAGCGTTATCATGCCAAGA
TTTCAGCCCCTCTATTAGATCGTATCGACATGCATATTTCTGTACAAGCATTAACTCAGGAAGAATTAATTGCCCCTAAC
ATTAATCCCAAGAAACAAAGTGATCTTATCCGAGAAAAGGTAATCAAAGTACGAAGCGTTCAATTGGAACGACAAAAGTG
TCTTAATGCCTCTTTAAGTGCCAATAGTTGTGAAAAAATTTGTGCATTAGGCATCCAAGAACAAAATTTTTTACGCCAGT
CTACGCTGCAACTCAAACTGTCTGCTCGAGGATATCATCGCTTATTGAAAGTTGCGCGAACTATTGCAGATATGAGTGAA
AGCAGTCAGGTTTTTCAAACTCATTTACAACAAGCATTGTCCTTTAGACATATTTTGAGCGCTCCTGGGACCCTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

77.888

99.406

0.774
  comM Legionella pneumophila strain ERS1305867

77.888

99.406

0.774
  comM Haemophilus influenzae Rd KW20

50

99.802

0.499
  comM Vibrio cholerae strain A1552

49.398

98.614

0.487
  comM Vibrio campbellii strain DS40M4

48.795

98.614

0.481
  comM Glaesserella parasuis strain SC1401

47.295

98.812

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.771

98.614

0.422