Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M001_RS20535 Genome accession   NZ_CP059396
Coordinates   4457523..4459037 (+) Length   504 a.a.
NCBI ID   WP_021231506.1    Uniprot ID   -
Organism   Aeromonas veronii Hm21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4452523..4464037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M001_RS20520 (M001_020520) - 4454260..4455204 (-) 945 WP_021231504.1 branched-chain amino acid transaminase -
  M001_RS20525 (M001_020525) ilvM 4455217..4455495 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  M001_RS20530 (M001_020530) ilvG 4455492..4457138 (-) 1647 WP_021231505.1 acetolactate synthase 2 catalytic subunit -
  M001_RS20535 (M001_020535) comM 4457523..4459037 (+) 1515 WP_021231506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M001_RS20540 (M001_020540) - 4459164..4460063 (+) 900 WP_021231507.1 acyltransferase -
  M001_RS20545 (M001_020545) - 4460070..4461035 (+) 966 WP_021231508.1 acyltransferase -
  M001_RS20550 (M001_020550) - 4460960..4461466 (-) 507 WP_021231509.1 DUF523 domain-containing protein -
  M001_RS20555 (M001_020555) - 4461463..4462113 (-) 651 WP_005339607.1 NUDIX hydrolase -
  M001_RS20560 (M001_020560) - 4462188..4462823 (+) 636 WP_021231510.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54616.54 Da        Isoelectric Point: 7.4493

>NTDB_id=469344 M001_RS20535 WP_021231506.1 4457523..4459037(+) (comM) [Aeromonas veronii Hm21]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
EPSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=469344 M001_RS20535 WP_021231506.1 4457523..4459037(+) (comM) [Aeromonas veronii Hm21]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAATATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACTGGCGAAATTCGTCCCGTACTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACAGCTTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGCCTTCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGACCCGGCGAAATATCGCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATTAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGATGGCCAAACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGCCTAGTCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462