Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0913_RS02710 Genome accession   NZ_CP059348
Coordinates   609981..610499 (+) Length   172 a.a.
NCBI ID   WP_036955024.1    Uniprot ID   -
Organism   Providencia rettgeri strain PROV023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604981..615499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0913_RS02700 (H0913_02700) - 605546..606742 (+) 1197 WP_036955033.1 aromatic amino acid transaminase -
  H0913_RS02705 (H0913_02705) uvrA 606803..609637 (-) 2835 WP_154602086.1 excinuclease ABC subunit UvrA -
  H0913_RS02710 (H0913_02710) ssb 609981..610499 (+) 519 WP_036955024.1 single-stranded DNA-binding protein Machinery gene
  H0913_RS18815 (H0913_02715) - 610717..611892 (+) 1176 WP_034613846.1 tyrosine-type recombinase/integrase -
  H0913_RS02720 (H0913_02720) - 611889..613487 (+) 1599 WP_049246663.1 tyrosine-type recombinase/integrase -
  H0913_RS02725 (H0913_02725) - 613480..615489 (+) 2010 WP_001279565.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18494.51 Da        Isoelectric Point: 4.9468

>NTDB_id=468949 H0913_RS02710 WP_036955024.1 609981..610499(+) (ssb) [Providencia rettgeri strain PROV023]
MATRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQSGGQGGWGQPQQPQAAQQFSGGGAAPARSPAPQTN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=468949 H0913_RS02710 WP_036955024.1 609981..610499(+) (ssb) [Providencia rettgeri strain PROV023]
ATGGCCACCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTCGCTAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAAATGCGTGAAAAAACCG
AATGGCACCGTGTTGTGATTTTCGGCAAATTAGCCGAAGTTGCTGGTGAATATCTGAAAAAAGGTTCACAAGTTTATATC
GAAGGTTCACTGCAAACCCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACACCACCGAAGTTGTGGTAAATATCGG
CGGTTCAATGCAGATGCTTGGTGGTCGCGGCGGTGATGCACCATCACAAGGTCAAAGCGGTGGGCAAGGCGGTTGGGGTC
AACCACAACAGCCACAAGCAGCACAACAATTCAGTGGTGGCGGCGCAGCGCCAGCGCGTTCACCAGCTCCACAAACTAAT
GAACCACCAATGGATTTTGATGACGATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.472

100

0.75
  ssb Glaesserella parasuis strain SC1401

58.289

100

0.634
  ssb Neisseria meningitidis MC58

48.588

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.488
  ssb Latilactobacillus sakei subsp. sakei 23K

34.254

100

0.36