Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HZT45_RS11680 Genome accession   NZ_CP059318
Coordinates   2452433..2453503 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2447433..2458503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS11630 (HZT45_11630) sipW 2447492..2448076 (-) 585 WP_012117977.1 signal peptidase I SipW -
  HZT45_RS11635 (HZT45_11635) tapA 2448048..2448719 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  HZT45_RS11640 (HZT45_11640) - 2448978..2449307 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  HZT45_RS11645 (HZT45_11645) - 2449348..2449527 (-) 180 WP_003153093.1 YqzE family protein -
  HZT45_RS11650 (HZT45_11650) comGG 2449584..2449961 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  HZT45_RS11655 (HZT45_11655) comGF 2449962..2450462 (-) 501 WP_257726452.1 competence type IV pilus minor pilin ComGF -
  HZT45_RS11660 (HZT45_11660) comGE 2450371..2450685 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  HZT45_RS11665 (HZT45_11665) comGD 2450669..2451106 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  HZT45_RS11670 (HZT45_11670) comGC 2451096..2451362 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  HZT45_RS11675 (HZT45_11675) comGB 2451409..2452446 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  HZT45_RS11680 (HZT45_11680) comGA 2452433..2453503 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  HZT45_RS11685 (HZT45_11685) - 2453700..2454650 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  HZT45_RS11690 (HZT45_11690) - 2454796..2456097 (+) 1302 WP_021494315.1 hemolysin family protein -
  HZT45_RS11695 (HZT45_11695) - 2456135..2456965 (-) 831 WP_015240214.1 STAS domain-containing protein -
  HZT45_RS11705 (HZT45_11705) - 2457172..2457552 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  HZT45_RS11710 (HZT45_11710) - 2457790..2458035 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=468531 HZT45_RS11680 WP_003153083.1 2452433..2453503(-) (comGA) [Bacillus velezensis strain BIOMA BV10]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=468531 HZT45_RS11680 WP_003153083.1 2452433..2453503(-) (comGA) [Bacillus velezensis strain BIOMA BV10]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374