Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   HZT45_RS11675 Genome accession   NZ_CP059318
Coordinates   2451409..2452446 (-) Length   345 a.a.
NCBI ID   WP_012117984.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2446409..2457446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS11625 (HZT45_11625) tasA 2446642..2447427 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  HZT45_RS11630 (HZT45_11630) sipW 2447492..2448076 (-) 585 WP_012117977.1 signal peptidase I SipW -
  HZT45_RS11635 (HZT45_11635) tapA 2448048..2448719 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  HZT45_RS11640 (HZT45_11640) - 2448978..2449307 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  HZT45_RS11645 (HZT45_11645) - 2449348..2449527 (-) 180 WP_003153093.1 YqzE family protein -
  HZT45_RS11650 (HZT45_11650) comGG 2449584..2449961 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  HZT45_RS11655 (HZT45_11655) comGF 2449962..2450462 (-) 501 WP_257726452.1 competence type IV pilus minor pilin ComGF -
  HZT45_RS11660 (HZT45_11660) comGE 2450371..2450685 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  HZT45_RS11665 (HZT45_11665) comGD 2450669..2451106 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  HZT45_RS11670 (HZT45_11670) comGC 2451096..2451362 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  HZT45_RS11675 (HZT45_11675) comGB 2451409..2452446 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  HZT45_RS11680 (HZT45_11680) comGA 2452433..2453503 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  HZT45_RS11685 (HZT45_11685) - 2453700..2454650 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  HZT45_RS11690 (HZT45_11690) - 2454796..2456097 (+) 1302 WP_021494315.1 hemolysin family protein -
  HZT45_RS11695 (HZT45_11695) - 2456135..2456965 (-) 831 WP_015240214.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39527.77 Da        Isoelectric Point: 9.4012

>NTDB_id=468530 HZT45_RS11675 WP_012117984.1 2451409..2452446(-) (comGB) [Bacillus velezensis strain BIOMA BV10]
MKRINRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLRQGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTDQIKKMLRYPMFLISSVCVMFYILQSLIIPQFAGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=468530 HZT45_RS11675 WP_012117984.1 2451409..2452446(-) (comGB) [Bacillus velezensis strain BIOMA BV10]
ATGAAGCGGATTAACCGAACCTGGCCCTTGAAGGATCAAGCAGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGCAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGGA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTGCTGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAAAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614