Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HZY77_RS09985 Genome accession   NZ_CP059257
Coordinates   2008029..2009519 (+) Length   496 a.a.
NCBI ID   WP_296814219.1    Uniprot ID   A0A7L5YE74
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2003029..2014519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS09960 (HZY77_09900) - 2003514..2004512 (-) 999 WP_296814211.1 ABC transporter substrate-binding protein -
  HZY77_RS09965 (HZY77_09905) - 2004878..2006299 (-) 1422 WP_296814213.1 ammonium transporter -
  HZY77_RS09970 (HZY77_09910) glnK 2006311..2006649 (-) 339 WP_018509024.1 P-II family nitrogen regulator -
  HZY77_RS09975 (HZY77_09915) - 2006719..2007519 (-) 801 WP_296814215.1 TorF family putative porin -
  HZY77_RS09980 (HZY77_09920) - 2007654..2008028 (+) 375 WP_296814217.1 accessory factor UbiK family protein -
  HZY77_RS09985 (HZY77_09925) comM 2008029..2009519 (+) 1491 WP_296814219.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HZY77_RS09990 - 2009495..2009800 (-) 306 WP_296814221.1 hypothetical protein -
  HZY77_RS09995 (HZY77_09930) - 2009763..2010545 (+) 783 WP_296814222.1 VIT1/CCC1 transporter family protein -
  HZY77_RS10000 (HZY77_09935) - 2010661..2011047 (-) 387 WP_296814224.1 rhodanese-like domain-containing protein -
  HZY77_RS10005 (HZY77_09940) xdp1 2011151..2012023 (-) 873 WP_296814226.1 exosortase-dependent surface protein XDP1 -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52517.13 Da        Isoelectric Point: 8.1051

>NTDB_id=468178 HZY77_RS09985 WP_296814219.1 2008029..2009519(+) (comM) [MAG: Thiobacillus sp. isolate SSC5]
MAVAVVKSRALNGMHAPEVVVEAHLANGLPAFTLVGLPETEVKEARDRVRAAIQNARYEFPARRITVNLAPADLPKESGR
FDLPIALAILAASGQVPADKFKHAEFAGELALTGELRPVRGALAMALATRTAGRQLVLPSASASEAALASGVETLGAASL
LDVCAWLAGQAALAAPEPGTLPLTPDYPDFADVKGQAAARRALEVAAAGGHSILMSGPPGTGKSMLAARFPGILPVMDET
EALEAAAVASLNGGFRHEHWQRRPFRAPHHTASAVALVGGGGNPRPGEISLAHHGVLFLDELPEFSRQVLEVLREPLETG
RITISRAARQADFPARFQLVAAMNPCPCGYLGHPTQACRDTPDQIARYRGRISGPLLDRIDIQISVPALTQAELMQASAG
EPSAAIRGRVQAARARQMQRQDKPNASLGTQEIEQFCQLDTAGENLLKQAIARLNLSARAYHRVLKLARSVADLADSDAI
APAHLAEAIQYRRPPA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=468178 HZY77_RS09985 WP_296814219.1 2008029..2009519(+) (comM) [MAG: Thiobacillus sp. isolate SSC5]
GTGGCCGTTGCCGTCGTCAAAAGCCGGGCGCTGAACGGCATGCATGCGCCGGAGGTGGTGGTCGAAGCGCATCTGGCCAA
CGGCCTGCCAGCGTTCACGCTGGTCGGCCTCCCGGAAACCGAGGTGAAGGAAGCGCGCGACCGCGTACGGGCGGCGATCC
AGAATGCGCGCTATGAATTCCCGGCGCGCCGCATCACGGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAATCCGGACGT
TTCGACCTGCCGATCGCGCTGGCGATCCTCGCCGCTTCAGGGCAGGTTCCGGCCGACAAATTCAAGCACGCCGAATTCGC
GGGCGAACTCGCATTGACCGGTGAATTGCGTCCGGTACGCGGGGCGCTGGCGATGGCACTCGCGACACGCACGGCAGGCA
GGCAACTGGTGCTGCCCAGCGCGTCGGCGAGCGAAGCGGCGCTCGCCAGCGGCGTCGAGACGCTGGGGGCGGCGAGCCTG
CTCGATGTCTGTGCCTGGCTCGCCGGGCAGGCCGCGCTCGCCGCGCCCGAACCGGGCACCCTCCCTCTGACGCCCGACTA
TCCCGACTTCGCTGACGTCAAAGGCCAGGCCGCCGCCCGGCGCGCGCTCGAAGTCGCCGCCGCCGGNGGACATTCGATCC
TGATGTCAGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCCGCACGCTTTCCGGGCATTCTGCCGGTGATGGATGAGACC
GAGGCGCTGGAAGCGGCTGCGGTCGCTTCGCTCAACGGCGGTTTCCGCCACGAGCACTGGCAGCGCCGCCCCTTCCGCGC
GCCGCACCATACGGCCTCGGCGGTTGCGCTGGTGGGCGGTGGCGGCAACCCGCGTCCGGGCGAGATTTCGCTGGCACACC
ACGGTGTGCTGTTTCTCGACGAACTGCCGGAATTCTCCCGACAGGTACTGGAGGTGCTGCGTGAGCCGCTGGAAACCGGG
CGCATCACGATCTCGCGCGCCGCCCGGCAGGCCGATTTCCCGGCACGCTTCCAACTGGTCGCCGCAATGAACCCTTGTCC
CTGCGGCTACCTCGGCCACCCGACCCAGGCCTGCCGCGACACGCCGGACCAGATTGCGCGCTACCGTGGACGCATTTCGG
GACCGCTGCTCGACCGCATCGACATCCAGATCAGCGTGCCGGCGTTGACGCAAGCCGAACTGATGCAGGCCAGCGCCGGC
GAACCCAGCGCGGCCATCCGCGGCCGCGTGCAGGCGGCGCGCGCACGCCAGATGCAGCGACAGGACAAACCCAATGCCTC
GCTCGGTACGCAGGAAATCGAACAGTTCTGCCAACTGGATACCGCTGGGGAAAACTTGCTGAAGCAGGCGATCGCGCGGC
TGAACCTGTCCGCGCGCGCCTATCACCGCGTCCTCAAGCTCGCGCGCAGCGTGGCCGACCTGGCTGACAGCGACGCGATT
GCACCGGCGCATCTCGCCGAAGCCATTCAATACCGACGGCCTCCCGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5YE74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.949

99.798

0.548
  comM Vibrio cholerae strain A1552

54.747

99.798

0.546
  comM Haemophilus influenzae Rd KW20

52.705

100

0.53
  comM Legionella pneumophila str. Paris

51.503

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.503

100

0.518
  comM Glaesserella parasuis strain SC1401

51.303

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.47