Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HS073_RS11930 Genome accession   NZ_CP059226
Coordinates   2319323..2319775 (-) Length   150 a.a.
NCBI ID   WP_012340854.1    Uniprot ID   W0R5B1
Organism   Mannheimia haemolytica strain 0739     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2309545..2320620 2319323..2319775 within 0


Gene organization within MGE regions


Location: 2309545..2320620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS073_RS11865 (HS073_11785) - 2309545..2310255 (+) 711 WP_006248874.1 hypothetical protein -
  HS073_RS11870 (HS073_11790) - 2310794..2311564 (-) 771 WP_409036754.1 aldo/keto reductase -
  HS073_RS11875 (HS073_11795) - 2311515..2311883 (+) 369 WP_308700758.1 DUF6803 family protein -
  HS073_RS11880 (HS073_11800) - 2312065..2312520 (+) 456 WP_005612095.1 DUF411 domain-containing protein -
  HS073_RS11885 (HS073_11805) - 2312530..2314077 (+) 1548 WP_409036755.1 multicopper oxidase family protein -
  HS073_RS11890 (HS073_11810) - 2314166..2314321 (-) 156 WP_012340841.1 alcohol dehydrogenase catalytic domain-containing protein -
  HS073_RS11895 (HS073_11815) - 2314410..2314589 (+) 180 WP_006248870.1 hypothetical protein -
  HS073_RS11900 (HS073_11820) - 2314638..2315156 (+) 519 WP_006248869.1 hypothetical protein -
  HS073_RS11905 (HS073_11825) tetR(H) 2315159..2315782 (-) 624 WP_409036756.1 tetracycline resistance transcriptional repressor TetR(H) -
  HS073_RS11910 (HS073_11830) tet(H) 2315874..2317076 (+) 1203 WP_409036757.1 tetracycline efflux MFS transporter Tet(H) -
  HS073_RS11915 (HS073_11835) - 2317172..2318485 (-) 1314 WP_409036758.1 ISL3 family transposase -
  HS073_RS11920 (HS073_11840) - 2318485..2318787 (-) 303 WP_011200813.1 hypothetical protein -
  HS073_RS11925 (HS073_11845) - 2318828..2319016 (-) 189 WP_011200812.1 hypothetical protein -
  HS073_RS11930 (HS073_11850) ssb 2319323..2319775 (-) 453 WP_012340854.1 single-stranded DNA-binding protein Machinery gene
  HS073_RS11935 (HS073_11855) - 2320132..2320620 (-) 489 WP_409036759.1 DUF3158 family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17204.13 Da        Isoelectric Point: 5.2733

>NTDB_id=467791 HS073_RS11930 WP_012340854.1 2319323..2319775(-) (ssb) [Mannheimia haemolytica strain 0739]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=467791 HS073_RS11930 WP_012340854.1 2319323..2319775(-) (ssb) [Mannheimia haemolytica strain 0739]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0R5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.76
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.527
  ssb Neisseria meningitidis MC58

45.087

100

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373