Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPSAT_RS00205 | Genome accession | NC_017359 |
| Coordinates | 35350..36486 (+) | Length | 378 a.a. |
| NCBI ID | WP_001045867.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Sat464 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30350..41486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSAT_RS00170 (HPSAT_00170) | panD | 30802..31152 (+) | 351 | WP_000142282.1 | aspartate 1-decarboxylase | - |
| HPSAT_RS00175 (HPSAT_00175) | - | 31163..31465 (+) | 303 | WP_000347918.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSAT_RS00180 (HPSAT_00180) | - | 31465..32460 (+) | 996 | WP_000468448.1 | PDZ domain-containing protein | - |
| HPSAT_RS00185 (HPSAT_00185) | comB6 | 32468..33523 (+) | 1056 | WP_000786689.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPSAT_RS00190 (HPSAT_00190) | comB7 | 33539..33652 (+) | 114 | WP_001218100.1 | hypothetical protein | Machinery gene |
| HPSAT_RS00195 (HPSAT_00195) | comB8 | 33649..34392 (+) | 744 | WP_000660544.1 | type IV secretion system protein | Machinery gene |
| HPSAT_RS00200 (HPSAT_00200) | comB9 | 34392..35357 (+) | 966 | WP_012443264.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSAT_RS00205 (HPSAT_00205) | comB10 | 35350..36486 (+) | 1137 | WP_001045867.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSAT_RS00210 (HPSAT_00210) | - | 36556..37968 (+) | 1413 | WP_000694832.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPSAT_RS00215 (HPSAT_00215) | gmd | 37983..39128 (+) | 1146 | WP_000659855.1 | GDP-mannose 4,6-dehydratase | - |
| HPSAT_RS00220 (HPSAT_00220) | - | 39121..40053 (+) | 933 | WP_001002423.1 | GDP-L-fucose synthase family protein | - |
| HPSAT_RS07965 (HPSAT_00225) | - | 40078..40236 (-) | 159 | WP_014534345.1 | hypothetical protein | - |
| HPSAT_RS00225 (HPSAT_00230) | hypE | 40332..41330 (-) | 999 | WP_000378781.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42209.86 Da Isoelectric Point: 9.9555
>NTDB_id=46769 HPSAT_RS00205 WP_001045867.1 35350..36486(+) (comB10) [Helicobacter pylori Sat464]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=46769 HPSAT_RS00205 WP_001045867.1 35350..36486(+) (comB10) [Helicobacter pylori Sat464]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAGCAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATCTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCTCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATTGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCGAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAATAA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAGCAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATCTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCTCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATTGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCGAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |