Detailed information NTG0046765

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPSAT_RS00185
• Genome accession: NC_017359
• Coordinates: 32468..33523 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786689.1
• Uniprot ID: -
• Organism: Helicobacter pylori Sat464
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27468..38523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSAT_RS00155 (HPSAT_00150)	-	27894..28307 (+)	414	WP_001023005.1	universal stress protein	-
HPSAT_RS00160 (HPSAT_00160)	-	28315..28590 (+)	276	WP_000784914.1	ATP-dependent Clp protease adaptor ClpS	-
HPSAT_RS00165 (HPSAT_00165)	-	28590..30812 (+)	2223	WP_001051541.1	AAA family ATPase	-
HPSAT_RS00170 (HPSAT_00170)	panD	30802..31152 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HPSAT_RS00175 (HPSAT_00175)	-	31163..31465 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSAT_RS00180 (HPSAT_00180)	-	31465..32460 (+)	996	WP_000468448.1	PDZ domain-containing protein	-
HPSAT_RS00185 (HPSAT_00185)	comB6	32468..33523 (+)	1056	WP_000786689.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSAT_RS00190 (HPSAT_00190)	comB7	33539..33652 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HPSAT_RS00195 (HPSAT_00195)	comB8	33649..34392 (+)	744	WP_000660544.1	type IV secretion system protein	Machinery gene
HPSAT_RS00200 (HPSAT_00200)	comB9	34392..35357 (+)	966	WP_012443264.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSAT_RS00205 (HPSAT_00205)	comB10	35350..36486 (+)	1137	WP_001045867.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSAT_RS00210 (HPSAT_00210)	-	36556..37968 (+)	1413	WP_000694832.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39803.76 Da
• Isoelectric Point: 8.8165

>NTDB_id=46765 HPSAT_RS00185 WP_000786689.1 32468..33523(+) (comB6) [Helicobacter pylori Sat464]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFMGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFTLGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITNPPASSSVSTSMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46765 HPSAT_RS00185 WP_000786689.1 32468..33523(+) (comB6) [Helicobacter pylori Sat464]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTATGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCACTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGAACCCACCCGCTTCTTCTAGCGTTTCTACTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969