Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HPCU_RS00195 Genome accession   NC_017358
Coordinates   34461..35426 (+) Length   321 a.a.
NCBI ID   WP_014534167.1    Uniprot ID   A0AB32X5Y7
Organism   Helicobacter pylori Cuz20     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29461..40426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPCU_RS00170 (HPCU_00155) panD 30859..31209 (+) 351 WP_000142269.1 aspartate 1-decarboxylase -
  HPCU_RS00175 (HPCU_00160) - 31220..31522 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HPCU_RS00180 (HPCU_00165) - 31522..32529 (+) 1008 WP_000468455.1 PDZ domain-containing protein -
  HPCU_RS00185 (HPCU_00170) comB6 32537..33592 (+) 1056 WP_000786664.1 P-type conjugative transfer protein TrbL Machinery gene
  HPCU_RS07965 comB7 33608..33721 (+) 114 WP_001217864.1 hypothetical protein Machinery gene
  HPCU_RS00190 (HPCU_00175) comB8 33718..34461 (+) 744 WP_000660504.1 type IV secretion system protein Machinery gene
  HPCU_RS00195 (HPCU_00180) comB9 34461..35426 (+) 966 WP_014534167.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPCU_RS00200 (HPCU_00185) comB10 35419..36555 (+) 1137 WP_001045874.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPCU_RS00205 (HPCU_00190) - 36625..38037 (+) 1413 WP_000694823.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPCU_RS00210 (HPCU_00195) gmd 38052..39197 (+) 1146 WP_000659884.1 GDP-mannose 4,6-dehydratase -
  HPCU_RS00215 (HPCU_00200) - 39190..40122 (+) 933 WP_001002523.1 GDP-L-fucose synthase family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 37016.58 Da        Isoelectric Point: 9.4632

>NTDB_id=46746 HPCU_RS00195 WP_014534167.1 34461..35426(+) (comB9) [Helicobacter pylori Cuz20]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDTNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKGNTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide


Download         Length: 966 bp        

>NTDB_id=46746 HPCU_RS00195 WP_014534167.1 34461..35426(+) (comB9) [Helicobacter pylori Cuz20]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATACTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGGAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAGCTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.355

100

0.941

Multiple sequence alignment