Detailed information NTG0046744

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPCU_RS00185
• Genome accession: NC_017358
• Coordinates: 32537..33592 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786664.1
• Uniprot ID: A0AB32X617
• Organism: Helicobacter pylori Cuz20
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27537..38592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPCU_RS00155 (HPCU_00140)	-	27954..28367 (+)	414	WP_001023017.1	universal stress protein	-
HPCU_RS00160 (HPCU_00145)	-	28375..28650 (+)	276	WP_000784915.1	ATP-dependent Clp protease adaptor ClpS	-
HPCU_RS00165 (HPCU_00150)	-	28650..30869 (+)	2220	WP_001051540.1	AAA family ATPase	-
HPCU_RS00170 (HPCU_00155)	panD	30859..31209 (+)	351	WP_000142269.1	aspartate 1-decarboxylase	-
HPCU_RS00175 (HPCU_00160)	-	31220..31522 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPCU_RS00180 (HPCU_00165)	-	31522..32529 (+)	1008	WP_000468455.1	PDZ domain-containing protein	-
HPCU_RS00185 (HPCU_00170)	comB6	32537..33592 (+)	1056	WP_000786664.1	P-type conjugative transfer protein TrbL	Machinery gene
HPCU_RS07965	comB7	33608..33721 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HPCU_RS00190 (HPCU_00175)	comB8	33718..34461 (+)	744	WP_000660504.1	type IV secretion system protein	Machinery gene
HPCU_RS00195 (HPCU_00180)	comB9	34461..35426 (+)	966	WP_014534167.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPCU_RS00200 (HPCU_00185)	comB10	35419..36555 (+)	1137	WP_001045874.1	DNA type IV secretion system protein ComB10	Machinery gene
HPCU_RS00205 (HPCU_00190)	-	36625..38037 (+)	1413	WP_000694823.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39620.57 Da
• Isoelectric Point: 8.8165

>NTDB_id=46744 HPCU_RS00185 WP_000786664.1 32537..33592(+) (comB6) [Helicobacter pylori Cuz20]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLLLAFGFFKTWRSVVIACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46744 HPCU_RS00185 WP_000786664.1 32537..33592(+) (comB6) [Helicobacter pylori Cuz20]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGCTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGATTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972