Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H0S56_RS01065 Genome accession   NZ_CP059081
Coordinates   244707..246197 (-) Length   496 a.a.
NCBI ID   WP_195725462.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239707..251197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01040 (H0S56_01040) - 240379..240759 (-) 381 WP_191112173.1 hypothetical protein -
  H0S56_RS01045 (H0S56_01045) - 240860..241258 (+) 399 WP_195725460.1 MAPEG family protein -
  H0S56_RS01050 (H0S56_01050) ppa 241376..241912 (+) 537 WP_004281037.1 inorganic diphosphatase -
  H0S56_RS01055 (H0S56_01055) - 242009..243328 (-) 1320 WP_195725461.1 OprD family outer membrane porin -
  H0S56_RS01060 (H0S56_01060) - 243926..244660 (+) 735 WP_180037303.1 TorF family putative porin -
  H0S56_RS01065 (H0S56_01065) comM 244707..246197 (-) 1491 WP_195725462.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H0S56_RS01070 (H0S56_01070) - 246264..246491 (-) 228 WP_004281041.1 accessory factor UbiK family protein -
  H0S56_RS01075 (H0S56_01075) glnK 246769..247107 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  H0S56_RS01080 (H0S56_01080) - 247167..248579 (+) 1413 WP_195725463.1 ammonium transporter -
  H0S56_RS01085 (H0S56_01085) nrdR 248720..249184 (+) 465 WP_004281044.1 transcriptional regulator NrdR -
  H0S56_RS01090 (H0S56_01090) ribD 249187..250275 (+) 1089 WP_195725464.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54555.48 Da        Isoelectric Point: 7.2419

>NTDB_id=467110 H0S56_RS01065 WP_195725462.1 244707..246197(-) (comM) [Acinetobacter lwoffii strain 12CE1]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTEHLEFIGELALDGQLRPVSGTLSIAIACQGDQHQLILPGPNAQEACQLPDFKVFAANHL
KEVCEHLSQAQRLPQIEASPLATDHFYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
EENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPESIKRYQNRISGPLLDRIDLQIDVPPLQAHELQDNRPTE
NSETIRQRVIAAYEIQMQRQNTLNMSLSPKQLEQYATLDHSAQHMLELAQQKLNLSARGYHRVLRVARTIADLNQSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=467110 H0S56_RS01065 WP_195725462.1 244707..246197(-) (comM) [Acinetobacter lwoffii strain 12CE1]
ATGTCTTTTGCCAAAATTTATACGCGAGGCTTGCTAGGCCTGCATGCGCCTTTAATTGAAGTCGAAGTTCATGTGAGTTC
GGGCATGCCTTCGCTCACTATAGTGGGGCTTCCCGAAGCGGCGGTACGTGAAAGTAAAGACCGGGTACGCTCTGCCATTT
TGAATAGCGGCTTTCAATTTCCGACCAAACGTCTGACCATTAATCTGGCCCCTGCAGATTTACCAAAAGATGGCTCACGT
CTGGATTTACCGATTGCTTTAGGCATTTTAGTGGCTTCAGGCCAGCTGCCTGAAAATTGCACCGAGCATCTGGAGTTTAT
TGGCGAGTTGGCCCTCGATGGTCAATTACGTCCTGTCAGCGGCACCTTAAGTATCGCCATTGCCTGTCAAGGTGACCAGC
ATCAACTGATTTTACCTGGCCCAAATGCACAGGAAGCCTGTCAGCTCCCAGACTTTAAAGTCTTTGCAGCCAATCATTTA
AAAGAAGTGTGTGAACATCTTTCCCAAGCGCAGCGTTTGCCGCAAATAGAAGCCAGCCCACTCGCTACAGATCATTTCTA
TAAGTTTGATCTTGCGGATGTAAAAGGACAATTACGACCACGGCGTGCTTTAGAAATTGCCGCGGCAGGTGGTCATTCCC
TGCTGTTTCGAGGTCCACCCGGAACAGGAAAAACTTTACTGGCTTCTCGATTGGCCAGCATTTTACCGCCCTTAAAGACG
GAGGAAAATCTGGAAGTCGCCAGTATTTATTCGGTGGCGAATGCCAATCACCCTTTTGGGCAACGGCCGTTTCGGGCACC
GCATCATACTGCTTCTGCTGTAGCACTGGTTGGTGGCGGCTCACACCCTAAACCAGGAGAGATTACCCTGGCACATTTAG
GGGTTTTATTTCTGGACGAGCTACCAGAATTCGACCGTAAAGTATTGGAAGTTCTACGTCAGCCTTTAGAAGCGAAGGAA
ATTGTCATTTCCCGAGCATCACGCCAAATTACTTTTCCGGCCAATTTCCAATTAGTGGCTGCCATGAATCCCTGCCCGTG
TGGTTATGCCTTTAATCAGGATATCCGCTGCCAATGTTCACCGGAAAGTATTAAACGCTATCAGAACCGGATTTCAGGCC
CGTTGCTGGATCGGATTGATTTACAGATTGATGTGCCGCCATTACAGGCACATGAGTTACAGGATAATAGACCTACAGAA
AACTCGGAAACGATTAGACAACGCGTCATTGCAGCCTATGAAATTCAGATGCAACGGCAAAATACCTTGAATATGAGTCT
GAGTCCAAAACAGCTAGAGCAATATGCCACATTAGATCATTCAGCTCAGCATATGCTTGAACTGGCTCAGCAAAAACTGA
ATTTATCAGCACGTGGCTATCATCGGGTCTTGCGTGTTGCACGCACCATTGCGGATTTGAATCAAAGTCCAGATATTCAA
AGTCAGCATCTTTCGGAAGCCCTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

51.613

100

0.516
  comM Legionella pneumophila strain ERS1305867

51.613

100

0.516
  comM Haemophilus influenzae Rd KW20

50.902

100

0.512
  comM Vibrio cholerae strain A1552

50.8

100

0.512
  comM Glaesserella parasuis strain SC1401

49.802

100

0.506
  comM Vibrio campbellii strain DS40M4

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.478