NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	H0S58_RS12480	Genome accession	NZ_CP059079
Coordinates	2673348..2674835 (+)	Length	495 a.a.
NCBI ID	WP_195726670.1	Uniprot ID	-
Organism	Acinetobacter sp. TTH0-4 strain 1BD1
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 2668348..2679835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S58_RS12455 (H0S58_12460)	ribD	2669271..2670374 (-)	1104	WP_195726669.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
H0S58_RS12460 (H0S58_12465)	nrdR	2670385..2670843 (-)	459	WP_053578978.1	transcriptional regulator NrdR	-
H0S58_RS12465 (H0S58_12470)	-	2670982..2672379 (-)	1398	WP_053578979.1	ammonium transporter	-
H0S58_RS12470 (H0S58_12475)	glnK	2672438..2672776 (-)	339	WP_004650081.1	P-II family nitrogen regulator	-
H0S58_RS12475 (H0S58_12480)	-	2673053..2673280 (+)	228	WP_053578980.1	accessory factor UbiK family protein	-
H0S58_RS12480 (H0S58_12485)	comM	2673348..2674835 (+)	1488	WP_195726670.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
H0S58_RS12485 (H0S58_12490)	-	2675044..2675796 (-)	753	WP_092720566.1	TorF family putative porin	-
H0S58_RS12490 (H0S58_12495)	-	2676875..2678188 (+)	1314	WP_195726671.1	OprD family outer membrane porin	-
H0S58_RS12495 (H0S58_12500)	ppa	2678285..2678809 (-)	525	WP_053578984.1	inorganic diphosphatase	-
H0S58_RS12500 (H0S58_12505)	-	2678938..2679336 (-)	399	WP_053578985.1	MAPEG family protein	-
H0S58_RS12505 (H0S58_12510)	-	2679443..2679826 (+)	384	WP_053578986.1	hypothetical protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54614.70 Da Isoelectric Point: 7.7414

                                >NTDB_id=467061 H0S58_RS12480 WP_195726670.1 2673348..2674835(+) (comM) [Acinetobacter sp. TTH0-4 strain 1BD1]

MSFAKIFTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIALGILIASGQIPENATDNLEFIGELALDGQLRSVTGILSIAIACQQSGHQLILPKQNAQEASQLPQFEVFAAQHL

KDVCEHLSKQQPIPQYQVQIPIAVDQYQCDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM

QENLEVARIYSVANTVHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE

IVISRASRQMTFPANFQLIAAMNPCPCGYAFNQDVRCQCSADAIKRYQNRISGPLLDRIDLHLDVPPLQATELQDTTPVE

NSQTVRERVIQAYQRQIQRQNCLNHALSPKQLEQYVVLDPQAQKIIEMAQQRLNLSARAYHRVLRVARSIADLSEHSEIQ

TQHLTEALSYRAQQN

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=467061 H0S58_RS12480 WP_195726670.1 2673348..2674835(+) (comM) [Acinetobacter sp. TTH0-4 strain 1BD1]

ATGTCATTTGCGAAAATTTTTACGCGGGGTCTATTGGGGCTACATGCACCATTGATTGAAGTTGAAGTTCATGTCAGTCA

AGGGCTGCCTTCTTTAACGATTGTGGGTCTGGCCGAAGCAGCGGTACGTGAAAGTAAAGATCGTGTACGATCCGCTATTA

TTAACAGTGGGTTTCAGTTTCCGACCAAACGTCTAACCATCAACTTAGCGCCCGCAGACTTACCCAAAGATGGCTCACGG

CTTGATTTACCCATTGCATTGGGTATTTTAATAGCATCGGGACAAATTCCAGAAAATGCCACAGACAATTTAGAATTTAT

TGGAGAACTGGCTTTAGATGGCCAACTTCGTTCAGTGACAGGAATTTTAAGTATTGCGATTGCCTGTCAGCAATCGGGAC

ATCAACTTATTCTACCTAAACAAAATGCACAAGAAGCTTCACAACTTCCTCAGTTTGAAGTTTTCGCGGCACAGCATTTA

AAAGATGTTTGTGAACATTTATCTAAGCAACAGCCTATTCCGCAATACCAAGTTCAGATACCAATTGCAGTCGATCAGTA

TCAGTGTGATTTGGCCGATGTCAAAGGTCAACTTCGACCTCGACGTGCATTGGAAATAGCTGCAGCAGGTGGACATTCCT

TATTATTTAAAGGACCTCCAGGAACAGGAAAAACACTTTTAGCCTCGCGACTTGCCAGTATATTGCCTCCTTTAAATATG

CAAGAGAACTTAGAAGTCGCACGAATTTATTCAGTTGCCAATACTGTGCACACTTTTGGACAGCGCCCTTTTCGTGCACC

ACACCATACTGCTTCTGCAATTGCTTTAGTCGGTGGTGGCTCACATCCTAAACCGGGCGAAATTACTTTGGCGCATTTAG

GGGTGTTATTTTTAGATGAGTTACCTGAATTTGATCGTAAAGTTTTAGAAGTTCTCAGACAGCCTTTAGAATCGAAAGAA

ATCGTGATTTCGCGTGCTTCTCGACAAATGACGTTTCCAGCAAACTTTCAATTGATTGCAGCCATGAATCCATGCCCTTG

CGGTTATGCATTTAATCAAGATGTGCGTTGTCAATGTTCAGCTGATGCTATTAAGCGTTATCAAAATCGTATTTCTGGGC

CATTGTTAGACCGTATAGATTTACATTTGGATGTCCCACCTTTGCAAGCAACCGAGTTACAAGACACCACTCCTGTAGAA

AATTCTCAGACTGTGCGTGAGCGTGTGATTCAAGCTTACCAAAGACAAATACAACGACAAAATTGTTTAAATCATGCTTT

AAGTCCGAAACAACTTGAACAATATGTGGTCTTAGACCCACAAGCACAAAAAATCATTGAAATGGCTCAGCAACGATTAA

ATTTATCTGCACGTGCTTATCATAGAGTGTTACGGGTAGCGCGCAGTATTGCAGATTTGTCTGAACACAGCGAAATTCAA

ACGCAACATCTAACTGAAGCGTTGTCTTATCGCGCTCAACAAAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	50.4	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.507
comM	Vibrio cholerae strain A1552	50.202	100	0.503
comM	Vibrio campbellii strain DS40M4	50	100	0.501
comM	Legionella pneumophila str. Paris	49.597	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.597	100	0.497
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.328	100	0.461

Detailed information NTG0467061