Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H0N27_RS01560 Genome accession   NZ_CP059039
Coordinates   338488..338961 (+) Length   157 a.a.
NCBI ID   WP_168726697.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333488..343961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS01535 (H0N27_01535) - 333952..336057 (-) 2106 WP_168726696.1 RelA/SpoT family protein -
  H0N27_RS01540 (H0N27_01540) - 336097..336226 (-) 130 Protein_293 hypothetical protein -
  H0N27_RS01545 (H0N27_01545) rpoZ 336265..336543 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H0N27_RS01550 (H0N27_01550) gmk 336616..337245 (-) 630 WP_000015937.1 guanylate kinase -
  H0N27_RS01555 (H0N27_01555) ispH 337368..338318 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H0N27_RS01560 (H0N27_01560) fimU 338488..338961 (+) 474 WP_168726697.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H0N27_RS01565 (H0N27_01565) pilV 338955..339515 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H0N27_RS01570 (H0N27_01570) pilW 339516..340517 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H0N27_RS01575 (H0N27_01575) pilX 340514..341332 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16809.38 Da        Isoelectric Point: 8.5355

>NTDB_id=466548 H0N27_RS01560 WP_168726697.1 338488..338961(+) (fimU) [Acinetobacter baumannii strain A118]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKAIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=466548 H0N27_RS01560 WP_168726697.1 338488..338961(+) (fimU) [Acinetobacter baumannii strain A118]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACG
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGCCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994