Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   H0N27_RS01565 Genome accession   NZ_CP059039
Coordinates   338955..339515 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333955..344515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS01540 (H0N27_01540) - 336097..336226 (-) 130 Protein_293 hypothetical protein -
  H0N27_RS01545 (H0N27_01545) rpoZ 336265..336543 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H0N27_RS01550 (H0N27_01550) gmk 336616..337245 (-) 630 WP_000015937.1 guanylate kinase -
  H0N27_RS01555 (H0N27_01555) ispH 337368..338318 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H0N27_RS01560 (H0N27_01560) fimU 338488..338961 (+) 474 WP_168726697.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H0N27_RS01565 (H0N27_01565) pilV 338955..339515 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H0N27_RS01570 (H0N27_01570) pilW 339516..340517 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H0N27_RS01575 (H0N27_01575) pilX 340514..341332 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=466549 H0N27_RS01565 WP_002194578.1 338955..339515(+) (pilV) [Acinetobacter baumannii strain A118]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=466549 H0N27_RS01565 WP_002194578.1 338955..339515(+) (pilV) [Acinetobacter baumannii strain A118]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTCTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414