Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HXV88_RS21280 Genome accession   NZ_CP058912
Coordinates   4586628..4588142 (+) Length   504 a.a.
NCBI ID   WP_043823222.1    Uniprot ID   -
Organism   Aeromonas veronii strain JC529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4581628..4593142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXV88_RS21265 (HXV88_21265) - 4583365..4584309 (-) 945 WP_179902782.1 branched-chain amino acid transaminase -
  HXV88_RS21270 (HXV88_21270) ilvM 4584322..4584600 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  HXV88_RS21275 (HXV88_21275) ilvG 4584597..4586243 (-) 1647 WP_179902783.1 acetolactate synthase 2 catalytic subunit -
  HXV88_RS21280 (HXV88_21280) comM 4586628..4588142 (+) 1515 WP_043823222.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HXV88_RS21285 (HXV88_21285) - 4588269..4589168 (+) 900 WP_043823224.1 acyltransferase -
  HXV88_RS21290 (HXV88_21290) - 4589175..4590140 (+) 966 WP_179902784.1 acyltransferase -
  HXV88_RS21295 (HXV88_21295) - 4590065..4590571 (-) 507 WP_160881481.1 DUF523 domain-containing protein -
  HXV88_RS21300 (HXV88_21300) - 4590568..4591218 (-) 651 WP_005339607.1 NrtR DNA-binding winged helix domain-containing protein -
  HXV88_RS21305 (HXV88_21305) - 4591293..4591928 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54606.50 Da        Isoelectric Point: 7.4493

>NTDB_id=465970 HXV88_RS21280 WP_043823222.1 4586628..4588142(+) (comM) [Aeromonas veronii strain JC529]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=465970 HXV88_RS21280 WP_043823222.1 4586628..4588142(+) (comM) [Aeromonas veronii strain JC529]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATTTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCCATCGCCATCGGAATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCCGGTCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCACGCGCCGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGAGGCGGCAGCCACCCGCGGCCCGGTGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTTCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCAGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAACATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464