Detailed information NTG0465918

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HU825_RS02270
• Genome accession: NZ_CP058908
• Coordinates: 457365..458705 (+)
• Length: 446 a.a.
• NCBI ID: WP_043297627.1
• Uniprot ID: -
• Organism: Pseudomonas phenolilytica strain RBPA9
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 452365..463705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU825_RS02245 (HU825_02240)	pgeF	452502..453239 (-)	738	WP_054094572.1	peptidoglycan editing factor PgeF	-
HU825_RS02250 (HU825_02245)	rluD	453236..454210 (-)	975	WP_234302815.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HU825_RS02255 (HU825_02250)	-	454358..455347 (+)	990	WP_043297625.1	outer membrane protein assembly factor BamD	-
HU825_RS02260 (HU825_02255)	-	455434..455661 (+)	228	WP_043297626.1	PP0621 family protein	-
HU825_RS02265 (HU825_02260)	pilS	455651..457243 (+)	1593	WP_284692200.1	ATP-binding protein	Regulator
HU825_RS02270 (HU825_02265)	pilR	457365..458705 (+)	1341	WP_043297627.1	sigma-54 dependent transcriptional regulator	Regulator
HU825_RS02275 (HU825_02270)	-	458765..459823 (-)	1059	WP_043297628.1	DUF2333 family protein	-
HU825_RS02280 (HU825_02275)	-	460042..461637 (+)	1596	WP_043297629.1	PleD family two-component system response regulator	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49618.12 Da
• Isoelectric Point: 6.3299

>NTDB_id=465918 HU825_RS02270 WP_043297627.1 457365..458705(+) (pilR) [Pseudomonas phenolilytica strain RBPA9]
MSARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLAREHYDLCLTDMRLPDGSGLELVQLIQQQHPQLPVA
MITAYGSLDTAISALKAGAFDFLTKPVDLNRLRELVSTALRVRSAPTEAAPVDSRLLGSSPPMKVLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRSERPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQVANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGTQEVLVDVRILCATHKDLAGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLADA
MLRRLAQECGDSPAHLHPDALAKLLAYRFPGNVRELENMLERAYTLCDGDEIKAADLRLADSPGPGESGEVSLAQIDSLE
DHLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=465918 HU825_RS02270 WP_043297627.1 457365..458705(+) (pilR) [Pseudomonas phenolilytica strain RBPA9]
ATGAGCGCCCGCCAGAAAGCACTGATCATCGATGACGAGCCCGACATTCGCGAACTCCTGGAAATCACCCTGGGGCGCAT
GAAGCTCGACACCCGCAGCGCCCGCAACCTCAAGGAGGCCCGCGAGTGGCTGGCGCGCGAGCACTATGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAGCGGACTGGAGCTGGTGCAGCTCATCCAGCAACAGCACCCGCAGCTGCCGGTTGCG
ATGATCACCGCCTACGGCAGCCTGGACACCGCCATCAGCGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGT
CGATCTCAACCGTCTGCGCGAGCTGGTCAGCACCGCACTGCGCGTACGCAGCGCCCCCACCGAAGCGGCACCTGTGGACA
GCCGTCTGCTCGGCAGCTCACCGCCGATGAAGGTGCTGCGCAAGCAGATCGACAAACTCGCCCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATTCACGAACAGGGGCCGCGCAGCGAGCGGCC
GTTCGTACCGGTCAACTGCGGAGCGATTCCCTCGGAACTGATGGAGAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCA
GCGGTGCCATCGAAGACAAACCCGGACTGTTCCAGGTAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTAGCCGACCTG
CCGCTGCCGATGCAGGTCAAGTTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGCGCGGTTGGCGGCACTCAGGAAGTGCT
GGTCGATGTGCGCATCCTCTGTGCCACCCACAAGGATCTCGCCGGCGAAGTCGCCGCCGGGCGCTTCCGTCAGGACCTGT
ACTACCGCCTCAACGTCATCGAACTGCGCGTGCCGCCGTTGCGCGAGCGTCGCGAAGACATCGCCCTGCTGGCCGATGCG
ATGTTGCGCCGCCTGGCGCAGGAATGCGGCGACAGCCCGGCGCACCTGCACCCCGACGCCTTGGCAAAATTGCTGGCCTA
CCGCTTTCCAGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGAGCCTACACCCTGTGCGACGGCGACGAGATCAAGG
CTGCGGACCTGCGCCTGGCCGACAGCCCCGGCCCAGGAGAAAGCGGAGAAGTCAGCTTGGCGCAGATCGACAGTCTGGAA
GACCATCTGGAAGAAATCGAACGCAAGCTGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGCACCGCCGCGGCACA
GCGCCTGGGGCTGACCTTCCGCTCGATGCGTTATCGACTGAAGAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	83.559	99.552	0.832
pilR	Acinetobacter baumannii strain A118	50.109	100	0.516
luxO	Vibrio cholerae strain A1552	37.136	100	0.372