Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT27_RS21565 Genome accession   NZ_CP058846
Coordinates   4407236..4407721 (+) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Shigella flexneri strain STLEFF_35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4407236..4423832 4407236..4407721 within 0


Gene organization within MGE regions


Location: 4407236..4423832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT27_RS21565 (HZT27_21370) ssb 4407236..4407721 (+) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  HZT27_RS21570 - 4407775..4408695 (+) 921 WP_240767024.1 hypothetical protein -
  HZT27_RS21575 - 4408752..4410095 (+) 1344 WP_240767025.1 TraM recognition domain-containing protein -
  HZT27_RS21580 (HZT27_21380) - 4410131..4410298 (-) 168 WP_001300931.1 hypothetical protein -
  HZT27_RS21590 (HZT27_21390) - 4411699..4412154 (-) 456 Protein_4233 hypothetical protein -
  HZT27_RS21595 (HZT27_21395) - 4412203..4412358 (-) 156 WP_000074142.1 hypothetical protein -
  HZT27_RS21600 (HZT27_21400) - 4412978..4413358 (+) 381 Protein_4235 integrase core domain-containing protein -
  HZT27_RS21605 (HZT27_21405) - 4413637..4417134 (+) 3498 WP_240767026.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HZT27_RS21610 (HZT27_21410) - 4417309..4417514 (-) 206 Protein_4237 hypothetical protein -
  HZT27_RS21615 - 4417513..4417626 (+) 114 Protein_4238 alkaline phosphatase -
  HZT27_RS21620 - 4417994..4418188 (-) 195 Protein_4239 hypothetical protein -
  HZT27_RS21625 (HZT27_21420) - 4418167..4418412 (+) 246 Protein_4240 transposase -
  HZT27_RS21630 (HZT27_21425) - 4418480..4419631 (+) 1152 WP_032304071.1 IS30-like element IS30 family transposase -
  HZT27_RS21635 (HZT27_21430) - 4419641..4420546 (+) 906 Protein_4242 IS3-like element IS911 family transposase -
  HZT27_RS21640 (HZT27_21435) - 4420550..4420777 (+) 228 Protein_4243 S16 family serine protease -
  HZT27_RS21645 (HZT27_21440) - 4420779..4421003 (-) 225 Protein_4244 hypothetical protein -
  HZT27_RS21650 (HZT27_21445) - 4421235..4421384 (-) 150 WP_072146520.1 Hha/YmoA family nucleoid-associated regulatory protein -
  HZT27_RS21655 (HZT27_21450) - 4422451..4423242 (+) 792 WP_074418710.1 hypothetical protein -
  HZT27_RS21660 (HZT27_21455) - 4423626..4423832 (+) 207 WP_001095912.1 AlpA family transcriptional regulator -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=465635 HZT27_RS21565 WP_000157061.1 4407236..4407721(+) (ssb) [Shigella flexneri strain STLEFF_35]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=465635 HZT27_RS21565 WP_000157061.1 4407236..4407721(+) (ssb) [Shigella flexneri strain STLEFF_35]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36