Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   HYO64_RS17670 Genome accession   NZ_CP058729
Coordinates   3690644..3691774 (+) Length   376 a.a.
NCBI ID   WP_114155560.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3685644..3696774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS17645 - 3685943..3686149 (-) 207 WP_000182542.1 hypothetical protein -
  HYO64_RS17650 - 3686203..3688278 (-) 2076 WP_114155555.1 TonB-dependent copper receptor -
  HYO64_RS17655 - 3688351..3688779 (-) 429 WP_114155554.1 DUF2946 family protein -
  HYO64_RS17660 def 3688816..3689346 (-) 531 WP_001196539.1 peptide deformylase -
  HYO64_RS17665 tsaP 3689469..3690623 (+) 1155 WP_000755286.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HYO64_RS17670 dprA 3690644..3691774 (+) 1131 WP_114155560.1 DNA-processing protein DprA Machinery gene
  HYO64_RS17675 - 3691825..3692394 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HYO64_RS17680 - 3692786..3693706 (-) 921 WP_000084546.1 DMT family transporter -
  HYO64_RS17685 - 3693812..3694462 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  HYO64_RS17690 - 3694599..3695813 (+) 1215 WP_000372838.1 MFS transporter -
  HYO64_RS17695 - 3695835..3696599 (+) 765 WP_000786955.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42020.51 Da        Isoelectric Point: 6.4988

>NTDB_id=465088 HYO64_RS17670 WP_114155560.1 3690644..3691774(+) (dprA) [Acinetobacter baumannii strain M164-3]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLELHANHLKRVNEFQTPQSQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGFCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=465088 HYO64_RS17670 WP_114155560.1 3690644..3691774(+) (dprA) [Acinetobacter baumannii strain M164-3]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGAGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAAGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACAGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCACCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTTTGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.404

100

0.984

  dprA Acinetobacter baumannii strain A118

98.138

100

0.981

  dprA Acinetobacter baylyi ADP1

70.079

100

0.71

  dprA Vibrio cholerae strain A1552

44.268

83.511

0.37