Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HYO64_RS17665 Genome accession   NZ_CP058729
Coordinates   3689469..3690623 (+) Length   384 a.a.
NCBI ID   WP_000755286.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3684469..3695623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS17640 - 3684659..3685873 (+) 1215 WP_114155556.1 oxygenase MpaB family protein -
  HYO64_RS17645 - 3685943..3686149 (-) 207 WP_000182542.1 hypothetical protein -
  HYO64_RS17650 - 3686203..3688278 (-) 2076 WP_114155555.1 TonB-dependent copper receptor -
  HYO64_RS17655 - 3688351..3688779 (-) 429 WP_114155554.1 DUF2946 family protein -
  HYO64_RS17660 def 3688816..3689346 (-) 531 WP_001196539.1 peptide deformylase -
  HYO64_RS17665 tsaP 3689469..3690623 (+) 1155 WP_000755286.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HYO64_RS17670 dprA 3690644..3691774 (+) 1131 WP_114155560.1 DNA-processing protein DprA Machinery gene
  HYO64_RS17675 - 3691825..3692394 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HYO64_RS17680 - 3692786..3693706 (-) 921 WP_000084546.1 DMT family transporter -
  HYO64_RS17685 - 3693812..3694462 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42378.33 Da        Isoelectric Point: 8.8713

>NTDB_id=465087 HYO64_RS17665 WP_000755286.1 3689469..3690623(+) (tsaP) [Acinetobacter baumannii strain M164-3]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNRHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=465087 HYO64_RS17665 WP_000755286.1 3689469..3690623(+) (tsaP) [Acinetobacter baumannii strain M164-3]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCGACATGTTAAAAATCCGCACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAATC
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGGGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGTAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992