Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HYO64_RS17455 Genome accession   NZ_CP058729
Coordinates   3645538..3647025 (+) Length   495 a.a.
NCBI ID   WP_114153485.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3640538..3652025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS17430 ribD 3641454..3642539 (-) 1086 WP_114153489.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  HYO64_RS17435 nrdR 3642555..3643013 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  HYO64_RS17440 - 3643172..3644569 (-) 1398 WP_000738520.1 ammonium transporter -
  HYO64_RS17445 glnK 3644627..3644965 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  HYO64_RS17450 - 3645245..3645472 (+) 228 WP_114153487.1 accessory factor UbiK family protein -
  HYO64_RS17455 comM 3645538..3647025 (+) 1488 WP_114153485.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HYO64_RS17460 - 3647040..3648474 (-) 1435 Protein_3397 PLP-dependent aminotransferase family protein -
  HYO64_RS17465 - 3648586..3649362 (+) 777 WP_114153481.1 aldolase -
  HYO64_RS17470 - 3649378..3650256 (+) 879 WP_114153479.1 dihydrodipicolinate synthase family protein -
  HYO64_RS17475 - 3650299..3651111 (-) 813 WP_000975212.1 TorF family putative porin -
  HYO64_RS17480 - 3651168..3651338 (-) 171 WP_000492276.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54583.52 Da        Isoelectric Point: 7.2753

>NTDB_id=465086 HYO64_RS17455 WP_114153485.1 3645538..3647025(+) (comM) [Acinetobacter baumannii strain M164-3]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRTPHHTASAIALVGGGSHPKPGEITLSHLVVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=465086 HYO64_RS17455 WP_114153485.1 3645538..3647025(+) (comM) [Acinetobacter baumannii strain M164-3]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGCGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCCGTATCAGGCGCTTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATATTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCACGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
TTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.008

100

0.511
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.283

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467