NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HQ393_RS13470	Genome accession	NZ_CP058627
Coordinates	2830990..2832483 (+)	Length	497 a.a.
NCBI ID	WP_179355666.1	Uniprot ID	-
Organism	Chitinibacter bivalviorum strain 2T18
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2825990..2837483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ393_RS13440 (HQ393_13440)	-	2826205..2827398 (+)	1194	WP_179355662.1	acetate/propionate family kinase	-
HQ393_RS13445 (HQ393_13445)	-	2827561..2828325 (+)	765	WP_179355663.1	BPSS1780 family membrane protein	-
HQ393_RS13450 (HQ393_13450)	-	2828322..2828696 (+)	375	WP_246307893.1	diacylglycerol kinase	-
HQ393_RS13455 (HQ393_13455)	-	2828761..2829171 (-)	411	WP_246307894.1	DUF2721 domain-containing protein	-
HQ393_RS13460 (HQ393_13460)	-	2829161..2829934 (-)	774	WP_179355664.1	LytTR family DNA-binding domain-containing protein	-
HQ393_RS13465 (HQ393_13465)	-	2829903..2830931 (-)	1029	WP_179355665.1	sensor histidine kinase	-
HQ393_RS13470 (HQ393_13470)	comM	2830990..2832483 (+)	1494	WP_179355666.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HQ393_RS13475 (HQ393_13475)	-	2832594..2833352 (+)	759	WP_179355667.1	HAD family hydrolase	-
HQ393_RS13480 (HQ393_13480)	-	2833427..2833900 (+)	474	WP_179355668.1	WbuC family cupin fold metalloprotein	-
HQ393_RS13485 (HQ393_13485)	-	2833916..2834140 (-)	225	WP_179355669.1	hypothetical protein	-
HQ393_RS13490 (HQ393_13490)	-	2834194..2835114 (-)	921	WP_179355670.1	LysR substrate-binding domain-containing protein	-
HQ393_RS13495 (HQ393_13495)	-	2835219..2835482 (+)	264	WP_179355671.1	DUF2917 domain-containing protein	-
HQ393_RS13500 (HQ393_13500)	-	2835482..2836159 (+)	678	WP_179355672.1	glutathione S-transferase family protein	-
HQ393_RS17700 (HQ393_13505)	-	2836156..2836653 (+)	498	Protein_2621	DUF3291 domain-containing protein	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 53272.89 Da Isoelectric Point: 7.5925

                                >NTDB_id=464684 HQ393_RS13470 WP_179355666.1 2830990..2832483(+) (comM) [Chitinibacter bivalviorum strain 2T18]

MSLAVLYSRALDGMHAQLVTVEVHLANGLPAFNLVGLADTEVREARERVRAAIQVAGFEFPSRRITVNLAPADLPKGAGH

YDLAIAIGILAASDQIPLDQLNEYEFAGELGLTGQLRSVRGALALAMAARDAGRTLVISQCSSPEAALIKDASVLAAEHI

LQVCQHFANGTPMSPAQAPEHQPQPQYPDLADVKGQLQARRALEIAAAGNHSILLIGPPGTGKSMLAQRLPGLLPALSES

EALEAATIQSLGHQGLDARRFGQRPFRSPHHTASSVALVGGGSMPQPGEISLAHHGILFLDELPEYDRKVLEVLREPLEN

GKIHISRAARQAEFPAQFQLVAAMNPCPCGYLGHPKKACRCTPDQVARYRSRISGPLLDRIDMVVEVGALADDVLSSRQA

GEASEPVRLRVGVARQRQLQRQAQHNAALPSAAIDQHCQPDADGLALLQNAVNKLGWSARAYHRVLRVARTVADLAGSKD

ISKAHIAEAIQYRRGLE

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=464684 HQ393_RS13470 WP_179355666.1 2830990..2832483(+) (comM) [Chitinibacter bivalviorum strain 2T18]

ATGTCATTGGCGGTACTGTATTCGCGCGCTTTAGACGGTATGCACGCACAGCTTGTTACGGTTGAAGTCCATTTGGCCAA

CGGGCTACCTGCATTTAATTTGGTCGGGCTCGCCGACACCGAAGTACGCGAAGCGCGCGAACGCGTTCGTGCCGCGATTC

AAGTGGCAGGTTTTGAATTCCCCTCGCGGCGCATTACCGTCAACTTGGCTCCAGCTGATTTACCCAAAGGGGCGGGGCAT

TATGATTTGGCGATCGCGATAGGTATTTTGGCTGCCAGCGACCAAATTCCGCTCGATCAGCTCAATGAATATGAATTTGC

TGGGGAATTGGGTTTAACCGGCCAATTGCGCTCGGTACGCGGCGCGCTGGCTTTGGCCATGGCAGCGCGCGATGCAGGCC

GTACGCTGGTCATCAGTCAATGCAGTAGCCCTGAAGCTGCGCTCATCAAAGATGCCAGTGTTTTGGCGGCGGAGCATATC

CTGCAAGTATGCCAGCATTTTGCAAATGGCACGCCCATGTCGCCCGCACAAGCGCCAGAACATCAGCCCCAGCCTCAATA

CCCTGATCTGGCGGATGTGAAAGGCCAACTACAGGCGCGCCGCGCCTTGGAAATTGCCGCAGCGGGCAATCATTCGATTT

TGCTCATTGGGCCTCCCGGCACGGGTAAATCGATGCTGGCGCAAAGGCTACCTGGGCTATTACCCGCATTAAGCGAGAGC

GAAGCATTAGAGGCCGCCACGATCCAATCGCTAGGACATCAGGGGCTGGATGCCAGGCGTTTTGGTCAGCGCCCATTTCG

ATCGCCTCATCACACCGCCTCCAGCGTCGCTTTAGTTGGCGGGGGCAGTATGCCGCAGCCCGGAGAAATCTCGCTCGCTC

ATCATGGCATTCTGTTTCTCGATGAACTCCCCGAATACGATCGCAAAGTCTTAGAGGTGCTACGCGAGCCACTGGAAAAC

GGCAAAATTCATATTTCCCGAGCGGCGCGACAAGCCGAGTTTCCTGCGCAATTTCAATTGGTGGCGGCGATGAATCCGTG

TCCATGCGGCTATCTGGGTCATCCGAAAAAAGCCTGCCGCTGCACGCCTGATCAGGTCGCGCGTTATCGGAGTCGTATTT

CTGGGCCACTGCTGGATCGCATCGATATGGTCGTGGAAGTCGGGGCACTGGCCGATGATGTACTCAGTAGTCGGCAAGCG

GGCGAGGCGAGCGAGCCTGTTCGCCTGCGCGTCGGCGTGGCCCGGCAACGTCAATTGCAGCGCCAAGCTCAGCATAATGC

CGCGCTACCCAGCGCGGCGATTGATCAGCATTGCCAGCCAGATGCGGATGGCTTGGCGCTACTGCAAAACGCCGTCAATA

AGCTAGGCTGGTCGGCCCGCGCCTATCATCGGGTACTGCGCGTGGCGCGGACTGTGGCTGATTTAGCGGGGAGCAAAGAC

ATTAGCAAGGCACATATTGCCGAGGCGATTCAATATCGGCGCGGGCTAGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	52.209	100	0.523
comM	Glaesserella parasuis strain SC1401	50.8	100	0.511
comM	Haemophilus influenzae Rd KW20	50.4	100	0.507
comM	Vibrio campbellii strain DS40M4	50.503	100	0.505
comM	Legionella pneumophila str. Paris	48.718	100	0.497
comM	Legionella pneumophila strain ERS1305867	48.718	100	0.497
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.726	100	0.463

Detailed information NTG0464684