Detailed information    

insolico Bioinformatically predicted

Overview


Name   pknB   Type   Regulator
Locus tag   LLI11_RS09960 Genome accession   NZ_CP069223
Coordinates   1979741..1981624 (-) Length   627 a.a.
NCBI ID   WP_058221661.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I.1.1     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context


Location: 1974741..1986624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI11_RS09930 (LLI11_09875) - 1975146..1975826 (-) 681 WP_003130794.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  LLI11_RS09935 (LLI11_09880) macP 1975859..1976137 (-) 279 WP_003130796.1 cell wall synthase accessory phosphoprotein MacP -
  LLI11_RS09940 (LLI11_09885) - 1976130..1976714 (-) 585 WP_003130797.1 NUDIX hydrolase -
  LLI11_RS09945 (LLI11_09890) glmU 1976819..1978195 (-) 1377 WP_003130798.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LLI11_RS09950 (LLI11_09895) proC 1978423..1979211 (+) 789 WP_012898440.1 pyrroline-5-carboxylate reductase -
  LLI11_RS09955 (LLI11_09900) rpsO 1979290..1979559 (-) 270 WP_010906184.1 30S ribosomal protein S15 -
  LLI11_RS09960 (LLI11_09905) pknB 1979741..1981624 (-) 1884 WP_058221661.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  LLI11_RS09965 (LLI11_09910) - 1981624..1982400 (-) 777 WP_003130802.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LLI11_RS09970 (LLI11_09915) rsmB 1982481..1983755 (-) 1275 WP_014570715.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LLI11_RS09980 (LLI11_09925) - 1984885..1985613 (-) 729 WP_228763253.1 Abi family protein -
  LLI11_RS09985 (LLI11_09930) - 1985795..1986574 (-) 780 WP_082225246.1 peptidoglycan amidohydrolase family protein -

Sequence


Protein


Download         Length: 627 a.a.        Molecular weight: 67893.87 Da        Isoelectric Point: 4.7347

>NTDB_id=464517 LLI11_RS09960 WP_058221661.1 1979741..1981624(-) (pknB) [Lactococcus lactis subsp. lactis strain I.1.1]
MIQIGKIFADRYRIIKEIGRGGMANVYQGEDTFLGDRLVAIKVLRSNFENDDIAIARFQREAFAMAELSHPNIVGISDVG
EFESQQYIVMEFVDGMTLKQYINQNAPLANDEAIEIITEILSAMDMAHSHGIIHRDLKPQNVLVSSSGTVKVTDFGIAKA
LSETSLTQTNTMFGSVHYLSPEQARGSNATVQSDIYAIGIILFELLTGQIPFDGDSAVAIALKHFQESIPSIINLNPEVP
QALENVVIKATAKDIKNRYTDVEEMMTDVATSTSLDRRGEEKLVFNKDHDETKIMPANLINPYDTNPLIDKKEDNDSQTD
EKATSSEVGNKNKKSKKGLIIGLIILLLVVGGATLAWVVSTPTNVKIPNVTNSTLSQAKSKIKDAKLKVGTVHKQQSSTI
AEGKVIKTDPTSGTTVRSNSSVDIYVSTGNEDIIKMKDFVGEKIDEAMATLLKDYGIDESQVTQTSVPSDSYPAGTIIKQ
SPKKGSSFDTKGSEKITFEVSSGKQVEVPDYKPNGQYMTYSQYQAALKAAGFTNITLDPQATTNQQADGYVYSVYPNVGT
SVDPTQEIVVTYSVYTAPSSSSTTSESTTTSETSSSTTSSTSSSTTSQPSTDNNNSSKESSTTSSSS

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=464517 LLI11_RS09960 WP_058221661.1 1979741..1981624(-) (pknB) [Lactococcus lactis subsp. lactis strain I.1.1]
ATGATTCAAATCGGTAAAATCTTTGCCGATCGTTATCGGATTATCAAAGAAATCGGACGTGGCGGAATGGCGAACGTTTA
TCAAGGTGAAGATACTTTTCTTGGTGACCGCTTAGTTGCAATAAAAGTGCTACGTTCAAATTTTGAAAACGATGATATCG
CGATTGCTCGTTTTCAGCGAGAAGCATTCGCCATGGCAGAACTTTCACATCCAAATATCGTAGGTATTTCTGATGTTGGT
GAATTTGAAAGTCAACAATACATTGTCATGGAATTTGTTGACGGCATGACACTTAAACAATACATCAATCAAAATGCACC
TTTAGCCAATGATGAAGCTATTGAAATTATTACTGAAATTTTATCAGCAATGGACATGGCCCATTCACATGGTATTATTC
ACCGGGATTTAAAACCACAAAATGTTTTAGTTTCCAGTAGTGGAACTGTAAAAGTAACGGATTTTGGAATTGCGAAAGCA
CTCTCTGAAACTTCACTTACTCAAACAAATACAATGTTTGGTTCGGTTCATTATTTATCACCAGAGCAAGCGCGTGGTTC
AAATGCAACTGTTCAATCAGATATTTATGCGATTGGAATTATTTTATTTGAGCTTTTAACAGGTCAAATTCCATTTGATG
GAGATTCTGCAGTTGCTATCGCTCTAAAACATTTCCAAGAGAGTATTCCAAGCATCATTAATCTCAATCCAGAAGTTCCG
CAAGCTTTGGAAAATGTTGTCATTAAAGCTACAGCGAAAGATATTAAAAATCGCTATACTGATGTAGAAGAAATGATGAC
TGATGTGGCAACTTCAACGAGTCTTGACCGTCGTGGGGAAGAAAAATTAGTTTTCAATAAGGATCATGATGAAACAAAAA
TTATGCCTGCCAATCTAATTAATCCTTATGACACCAATCCTCTGATTGATAAAAAAGAAGATAATGATTCACAAACAGAT
GAAAAAGCTACAAGCTCAGAAGTAGGAAATAAAAACAAAAAATCTAAAAAAGGCTTGATTATTGGTCTTATTATCCTTCT
TTTAGTTGTTGGCGGTGCTACTTTGGCTTGGGTTGTCTCAACACCAACTAATGTTAAGATACCTAATGTGACAAACTCGA
CACTTAGCCAAGCAAAAAGCAAAATTAAAGATGCAAAACTTAAAGTGGGAACAGTTCATAAACAACAAAGTTCAACGATT
GCTGAAGGAAAAGTTATCAAGACTGATCCAACTAGTGGAACAACCGTGAGATCTAATAGCTCCGTTGATATCTATGTTTC
TACGGGAAATGAAGATATCATCAAAATGAAGGACTTTGTCGGTGAAAAGATTGATGAGGCGATGGCAACATTACTTAAGG
ATTATGGTATTGATGAAAGCCAAGTCACTCAAACTTCCGTTCCTAGTGATTCTTACCCAGCAGGTACAATCATTAAACAA
AGCCCTAAAAAAGGTTCTAGTTTTGATACCAAAGGGAGTGAAAAAATTACCTTTGAAGTTTCAAGTGGAAAACAAGTTGA
AGTTCCGGATTATAAACCGAACGGTCAATATATGACTTATTCACAGTATCAAGCTGCCTTAAAAGCTGCAGGATTCACTA
ATATTACACTAGACCCTCAAGCAACAACGAATCAACAAGCTGATGGTTATGTTTACTCAGTCTATCCAAATGTAGGGACA
TCTGTTGATCCAACTCAAGAAATTGTAGTCACTTATAGCGTCTATACTGCTCCAAGTTCAAGTTCAACAACTTCTGAATC
AACTACGACGTCTGAAACTTCATCAAGTACAACTTCAAGTACTTCAAGCTCTACAACAAGTCAGCCGTCAACAGATAACA
ACAATAGCAGCAAAGAATCTTCAACAACGTCATCAAGTAGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

49.262

86.443

0.426

  stkP/pknB Streptococcus salivarius strain HSISS4

51.445

82.775

0.426

  stkP Streptococcus pneumoniae TIGR4

48.024

80.702

0.388

  stkP Streptococcus pneumoniae D39

47.826

80.702

0.386

  stkP Streptococcus pneumoniae R6

47.826

80.702

0.386

  stkP Streptococcus pneumoniae Rx1

47.628

80.702

0.384