Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HTZ92_RS16415 Genome accession   NZ_CP058289
Coordinates   3463952..3465106 (+) Length   384 a.a.
NCBI ID   WP_000755112.1    Uniprot ID   A0A6F8TKE6
Organism   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458952..3470106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ92_RS16390 (HTZ92_3200) - 3459103..3460317 (+) 1215 WP_001177956.1 oxygenase MpaB family protein -
  HTZ92_RS16395 (HTZ92_3201) - 3460387..3460593 (-) 207 WP_000182542.1 hypothetical protein -
  HTZ92_RS16400 (HTZ92_3202) - 3460647..3462761 (-) 2115 WP_001120684.1 TonB-dependent copper receptor -
  HTZ92_RS16405 (HTZ92_3203) - 3462834..3463262 (-) 429 WP_000231976.1 DUF2946 family protein -
  HTZ92_RS16410 (HTZ92_3204) def 3463299..3463829 (-) 531 WP_001196539.1 peptide deformylase -
  HTZ92_RS16415 (HTZ92_3205) tsaP 3463952..3465106 (+) 1155 WP_000755112.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HTZ92_RS16420 (HTZ92_3206) dprA 3465127..3466257 (+) 1131 WP_001984977.1 DNA-processing protein DprA Machinery gene
  HTZ92_RS16425 (HTZ92_3207) - 3466308..3466877 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HTZ92_RS16430 (HTZ92_3208) - 3467269..3468189 (-) 921 WP_000084546.1 DMT family transporter -
  HTZ92_RS16435 (HTZ92_3209) - 3468295..3468945 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42424.31 Da        Isoelectric Point: 8.2461

>NTDB_id=463523 HTZ92_RS16415 WP_000755112.1 3463952..3465106(+) (tsaP) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
MKKVFDGMVNFHALGIKKHLLALALCTGVTIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCNLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDSGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=463523 HTZ92_RS16415 WP_000755112.1 3463952..3465106(+) (tsaP) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCACAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAACCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTTCTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATAGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACCCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TKE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.177

100

0.982