Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JNN79_RS21000 Genome accession   NZ_CP068825
Coordinates   4367081..4368205 (-) Length   374 a.a.
NCBI ID   WP_000228540.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C030256     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4362081..4373205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN79_RS20970 (JNN79_20970) yrdA 4363881..4364435 (+) 555 WP_001286217.1 gamma carbonic anhydrase family protein -
  JNN79_RS20975 (JNN79_20975) yrdB 4364411..4364668 (-) 258 WP_001070562.1 DUF1488 domain-containing protein -
  JNN79_RS20980 (JNN79_20980) aroE 4364665..4365483 (-) 819 WP_000451230.1 shikimate dehydrogenase -
  JNN79_RS20985 (JNN79_20985) tsaC 4365488..4366060 (-) 573 WP_001310090.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JNN79_RS20990 (JNN79_20990) yrdD 4366065..4366607 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  JNN79_RS20995 (JNN79_20995) smg 4366636..4367109 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  JNN79_RS21000 (JNN79_21000) dprA 4367081..4368205 (-) 1125 WP_000228540.1 DNA-protecting protein DprA Machinery gene
  JNN79_RS21005 (JNN79_21005) def 4368335..4368844 (+) 510 WP_000114984.1 peptide deformylase -
  JNN79_RS21010 (JNN79_21010) fmt 4368859..4369806 (+) 948 WP_000004443.1 methionyl-tRNA formyltransferase -
  JNN79_RS21015 (JNN79_21015) rsmB 4369852..4371141 (+) 1290 WP_001309796.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JNN79_RS21020 (JNN79_21020) trkA 4371163..4372539 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JNN79_RS21025 (JNN79_21025) mscL 4372669..4373079 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41035.00 Da        Isoelectric Point: 6.1815

>NTDB_id=463495 JNN79_RS21000 WP_000228540.1 4367081..4368205(-) (dprA) [Escherichia coli strain RIVM_C030256]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSYIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=463495 JNN79_RS21000 WP_000228540.1 4367081..4368205(-) (dprA) [Escherichia coli strain RIVM_C030256]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGTATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTAGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGACGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393
  dprA Legionella pneumophila strain ERS1305867

44.073

87.968

0.388