Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | HW576_RS26115 | Genome accession | NZ_CP058262 |
| Coordinates | 5032092..5032454 (-) | Length | 120 a.a. |
| NCBI ID | WP_013059785.1 | Uniprot ID | - |
| Organism | Priestia megaterium strain BIM B-1314D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5027580..5068385 | 5032092..5032454 | within | 0 |
Gene organization within MGE regions
Location: 5027580..5068385
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW576_RS26105 (HW576_26105) | - | 5027580..5030210 (+) | 2631 | WP_064472198.1 | DEAD/DEAH box helicase | - |
| HW576_RS26110 (HW576_26110) | - | 5030508..5031554 (+) | 1047 | WP_063670706.1 | C40 family peptidase | - |
| HW576_RS26115 (HW576_26115) | ssbB | 5032092..5032454 (-) | 363 | WP_013059785.1 | single-stranded DNA-binding protein | Machinery gene |
| HW576_RS26120 (HW576_26120) | - | 5032551..5032988 (+) | 438 | WP_014457773.1 | YwpF-like family protein | - |
| HW576_RS26125 (HW576_26125) | - | 5033511..5033933 (+) | 423 | WP_013059787.1 | helix-turn-helix transcriptional regulator | - |
| HW576_RS26130 (HW576_26130) | fabZ | 5033962..5034396 (-) | 435 | WP_013059788.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| HW576_RS26135 (HW576_26135) | - | 5034480..5035301 (-) | 822 | WP_098277600.1 | flagellar hook-basal body protein | - |
| HW576_RS26140 (HW576_26140) | - | 5035325..5036149 (-) | 825 | WP_029319385.1 | flagellar hook-basal body protein | - |
| HW576_RS26145 (HW576_26145) | - | 5036264..5037265 (-) | 1002 | WP_013059791.1 | rod shape-determining protein | - |
| HW576_RS26150 (HW576_26150) | spoIIID | 5037452..5037715 (-) | 264 | WP_013059792.1 | sporulation transcriptional regulator SpoIIID | - |
| HW576_RS26155 (HW576_26155) | - | 5037991..5038821 (-) | 831 | WP_028409695.1 | M23 family metallopeptidase | - |
| HW576_RS26160 (HW576_26160) | spoIID | 5038984..5040006 (-) | 1023 | WP_029319387.1 | stage II sporulation protein D | - |
| HW576_RS26165 (HW576_26165) | murA | 5040169..5041473 (-) | 1305 | WP_013059795.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| HW576_RS26170 (HW576_26170) | - | 5041505..5042245 (-) | 741 | WP_013059796.1 | YwmB family TATA-box binding protein | - |
| HW576_RS26175 (HW576_26175) | - | 5042406..5042642 (-) | 237 | WP_013059797.1 | DUF1146 family protein | - |
| HW576_RS26180 (HW576_26180) | - | 5042917..5043321 (-) | 405 | WP_013059798.1 | F0F1 ATP synthase subunit epsilon | - |
| HW576_RS26185 (HW576_26185) | atpD | 5043348..5044769 (-) | 1422 | WP_013059799.1 | F0F1 ATP synthase subunit beta | - |
| HW576_RS26190 (HW576_26190) | - | 5044806..5045663 (-) | 858 | WP_013059800.1 | F0F1 ATP synthase subunit gamma | - |
| HW576_RS26195 (HW576_26195) | atpA | 5045769..5047277 (-) | 1509 | WP_013085461.1 | F0F1 ATP synthase subunit alpha | - |
| HW576_RS26200 (HW576_26200) | - | 5047293..5047838 (-) | 546 | WP_177563928.1 | F0F1 ATP synthase subunit delta | - |
| HW576_RS26205 (HW576_26205) | - | 5047835..5048353 (-) | 519 | WP_013085463.1 | F0F1 ATP synthase subunit B | - |
| HW576_RS26210 (HW576_26210) | atpE | 5048456..5048668 (-) | 213 | WP_013059804.1 | F0F1 ATP synthase subunit C | - |
| HW576_RS26215 (HW576_26215) | atpB | 5048759..5049469 (-) | 711 | WP_013059805.1 | F0F1 ATP synthase subunit A | - |
| HW576_RS26220 (HW576_26220) | - | 5049488..5049859 (-) | 372 | WP_013059806.1 | ATP synthase subunit I | - |
| HW576_RS26225 (HW576_26225) | - | 5049866..5050087 (-) | 222 | WP_013059807.1 | AtpZ/AtpI family protein | - |
| HW576_RS26230 (HW576_26230) | - | 5050385..5052577 (-) | 2193 | WP_098277601.1 | S8 family serine peptidase | - |
| HW576_RS26235 (HW576_26235) | wecB | 5052646..5053797 (-) | 1152 | WP_025601419.1 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | - |
| HW576_RS26240 (HW576_26240) | upp | 5053820..5054449 (-) | 630 | WP_013059810.1 | uracil phosphoribosyltransferase | - |
| HW576_RS26245 (HW576_26245) | glyA | 5054663..5055907 (-) | 1245 | WP_013059811.1 | serine hydroxymethyltransferase | - |
| HW576_RS26250 (HW576_26250) | - | 5056025..5056597 (-) | 573 | WP_029711154.1 | TIGR01440 family protein | - |
| HW576_RS26255 (HW576_26255) | rpiB | 5056612..5057073 (-) | 462 | WP_025601414.1 | ribose 5-phosphate isomerase B | - |
| HW576_RS26260 (HW576_26260) | - | 5057154..5057582 (-) | 429 | WP_025601411.1 | low molecular weight protein arginine phosphatase | - |
| HW576_RS26265 (HW576_26265) | - | 5057633..5057788 (-) | 156 | WP_155660731.1 | hypothetical protein | - |
| HW576_RS26270 (HW576_26270) | - | 5057811..5058371 (-) | 561 | WP_013059815.1 | manganese efflux pump MntP family protein | - |
| HW576_RS26275 (HW576_26275) | - | 5058439..5059479 (-) | 1041 | WP_025601926.1 | L-threonylcarbamoyladenylate synthase | - |
| HW576_RS26280 (HW576_26280) | - | 5059672..5060118 (-) | 447 | WP_029319403.1 | acetyltransferase | - |
| HW576_RS26285 (HW576_26285) | spoIIR | 5060204..5061094 (-) | 891 | WP_055991595.1 | stage II sporulation protein R | - |
| HW576_RS26290 (HW576_26290) | prmC | 5061215..5062066 (-) | 852 | WP_029319407.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| HW576_RS26295 (HW576_26295) | prfA | 5062066..5063133 (-) | 1068 | WP_013059820.1 | peptide chain release factor 1 | - |
| HW576_RS26300 (HW576_26300) | - | 5063272..5063895 (-) | 624 | WP_029319409.1 | thymidine kinase | - |
| HW576_RS26305 (HW576_26305) | rpmE | 5064091..5064291 (-) | 201 | WP_013059822.1 | 50S ribosomal protein L31 | - |
| HW576_RS26310 (HW576_26310) | rho | 5064446..5065720 (-) | 1275 | WP_013059823.1 | transcription termination factor Rho | - |
| HW576_RS26315 (HW576_26315) | - | 5066247..5067533 (-) | 1287 | WP_013059824.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| HW576_RS26320 (HW576_26320) | fsa | 5067741..5068385 (-) | 645 | WP_013059825.1 | fructose-6-phosphate aldolase | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13486.22 Da Isoelectric Point: 7.1647
>NTDB_id=463335 HW576_RS26115 WP_013059785.1 5032092..5032454(-) (ssbB) [Priestia megaterium strain BIM B-1314D]
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE
Nucleotide
Download Length: 363 bp
>NTDB_id=463335 HW576_RS26115 WP_013059785.1 5032092..5032454(-) (ssbB) [Priestia megaterium strain BIM B-1314D]
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.813 |
89.167 |
0.533 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
88.333 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.887 |
88.333 |
0.458 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.509 |
88.333 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.509 |
88.333 |
0.367 |