NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	JNN66_RS02530	Genome accession	NZ_CP068823
Coordinates	528787..529911 (+)	Length	374 a.a.
NCBI ID	WP_000228525.1	Uniprot ID	-
Organism	Escherichia coli strain RIVM_C029494
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 523787..534911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNN66_RS02505 (JNN66_02505)	mscL	523913..524323 (-)	411	WP_000022442.1	large-conductance mechanosensitive channel protein MscL	-
JNN66_RS02510 (JNN66_02510)	trkA	524453..525829 (-)	1377	WP_000691382.1	Trk system potassium transporter TrkA	-
JNN66_RS02515 (JNN66_02515)	rsmB	525851..527140 (-)	1290	WP_001361938.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
JNN66_RS02520 (JNN66_02520)	fmt	527186..528133 (-)	948	WP_000004466.1	methionyl-tRNA formyltransferase	-
JNN66_RS02525 (JNN66_02525)	def	528148..528657 (-)	510	WP_000114986.1	peptide deformylase	-
JNN66_RS02530 (JNN66_02530)	dprA	528787..529911 (+)	1125	WP_000228525.1	DNA-protecting protein DprA	Machinery gene
JNN66_RS02535 (JNN66_02535)	smg	529883..530356 (+)	474	WP_000460682.1	DUF494 family protein Smg	-
JNN66_RS02540 (JNN66_02540)	yrdD	530385..530927 (+)	543	WP_001129723.1	type I DNA topoisomerase	-
JNN66_RS02545 (JNN66_02545)	tsaC	530932..531504 (+)	573	WP_001361937.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
JNN66_RS02550 (JNN66_02550)	aroE	531509..532327 (+)	819	WP_000451226.1	shikimate dehydrogenase	-
JNN66_RS02555 (JNN66_02555)	yrdB	532324..532581 (+)	258	WP_001070584.1	DUF1488 domain-containing protein	-
JNN66_RS02560 (JNN66_02560)	yrdA	532557..533111 (-)	555	WP_001286216.1	gamma carbonic anhydrase family protein	-

Sequence

Protein

Download Length: 374 a.a. Molecular weight: 40933.83 Da Isoelectric Point: 6.1402

                                >NTDB_id=463280 JNN66_RS02530 WP_000228525.1 528787..529911(+) (dprA) [Escherichia coli strain RIVM_C029494]

MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE

FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN

GVSIAVLGNGLNTIHPRRHAPLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA

LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE

VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide

Download Length: 1125 bp

                                >NTDB_id=463280 JNN66_RS02530 WP_000228525.1 528787..529911(+) (dprA) [Escherichia coli strain RIVM_C029494]

ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG

GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT

CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA

TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC

ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG

CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT

GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCTCCACTGGCTACCAGTTTGCT

TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA

TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG

CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA

ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC

CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG

GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT

AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG

TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	48.509	98.663	0.479
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	48.71	82.888	0.404
dprA	Vibrio cholerae strain A1552	48.71	82.888	0.404
dprA	Glaesserella parasuis strain SC1401	44.807	90.107	0.404
dprA	Legionella pneumophila strain ERS1305867	43.363	90.642	0.393
dprA	Haemophilus influenzae Rd KW20	43.62	90.107	0.393

Detailed information NTG0463280