Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ED5_RS01535 Genome accession   NZ_CP058253
Coordinates   333880..334404 (+) Length   174 a.a.
NCBI ID   WP_177317012.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain ED5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328880..339404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ED5_RS01515 (ED5_0306) aphA 329203..329916 (+) 714 WP_021242762.1 acid phosphatase AphA -
  ED5_RS01520 (ED5_0307) - 330030..330446 (+) 417 WP_008503381.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ED5_RS01525 (ED5_0308) - 330449..330802 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  ED5_RS01530 (ED5_0309) uvrA 330806..333628 (-) 2823 WP_177317011.1 excinuclease ABC subunit UvrA -
  ED5_RS01535 (ED5_0310) ssb 333880..334404 (+) 525 WP_177317012.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ED5_RS01540 (ED5_0311) - 334467..334748 (-) 282 WP_008503385.1 YjcB family protein -
  ED5_RS01545 (ED5_0312) - 335385..336950 (+) 1566 WP_023293514.1 EAL domain-containing protein -
  ED5_RS01550 (ED5_0313) soxS 336957..337283 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  ED5_RS01555 (ED5_0314) soxR 337382..337840 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  ED5_RS01560 (ED5_0315) - 338215..338886 (+) 672 WP_008503389.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18623.63 Da        Isoelectric Point: 5.2456

>NTDB_id=463083 ED5_RS01535 WP_177317012.1 333880..334404(+) (ssb) [Enterobacter roggenkampii strain ED5]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGSAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=463083 ED5_RS01535 WP_177317012.1 333880..334404(+) (ssb) [Enterobacter roggenkampii strain ED5]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTAGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.782
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

45.81

100

0.471
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.471
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.362