Detailed information NTG0462999

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HA399_RS00360
• Genome accession: NZ_CP058244
• Coordinates: 80665..82209 (+)
• Length: 514 a.a.
• NCBI ID: WP_404325652.1
• Uniprot ID: -
• Organism: Cobetia sp. UIB-001
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 75665..87209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HA399_RS00335 (HA399_00335)	glnK	76202..76540 (-)	339	WP_024951507.1	P-II family nitrogen regulator	-
HA399_RS00340 (HA399_00340)	-	76690..77937 (-)	1248	WP_043331583.1	ammonium transporter	-
HA399_RS00345 (HA399_00345)	-	77969..78307 (-)	339	WP_043331582.1	P-II family nitrogen regulator	-
HA399_RS00350 (HA399_00350)	-	78745..79119 (+)	375	WP_192839057.1	accessory factor UbiK family protein	-
HA399_RS00355 (HA399_00355)	-	79214..79492 (-)	279	WP_043331581.1	hypothetical protein	-
HA399_RS00360 (HA399_00360)	comM	80665..82209 (+)	1545	WP_404325652.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HA399_RS00365 (HA399_00365)	-	82252..83337 (-)	1086	WP_404325654.1	DUF4105 domain-containing protein	-
HA399_RS00370 (HA399_00370)	-	83362..84513 (-)	1152	WP_404325655.1	pyridoxal phosphate-dependent aminotransferase	-
HA399_RS00375 (HA399_00375)	-	84642..85169 (-)	528	WP_404325656.1	hypothetical protein	-
HA399_RS00380 (HA399_00380)	-	85166..86158 (-)	993	WP_404325657.1	alpha/beta hydrolase	-

Sequence

Protein

• Length: 514 a.a.
• Molecular weight: 54909.25 Da
• Isoelectric Point: 7.2929

>NTDB_id=462999 HA399_RS00360 WP_404325652.1 80665..82209(+) (comM) [Cobetia sp. UIB-001]
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLSIVGLPEAAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGR
FDLPIALGILVASGQIPEEAVAAMECLGELALDGSIRAVTGVLPAALCCRKAGRTLVVPRGNADEAALAEELEVLAVGHL
LELVAHLLGRERLTPHVCSIIPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTMLASRLSGILPPLGE
GEALEVAAVRSVCGLPIMERWGQRPFRAPHHTASGVALVGGGSKPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLES
GRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPAQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATP
GEASAGVRERVLAARARQLARGGLNAHLDTHALEAACQLEDGERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIDQDGV
QRPQLMEAIGYRQLDRMMGRDPARPGAGAQRDTA

Nucleotide

• Length: 1545 bp

>NTDB_id=462999 HA399_RS00360 WP_404325652.1 80665..82209(+) (comM) [Cobetia sp. UIB-001]
ATGTCATTGGCAATGTTGCGCACGCGCGCGTCACTTGGTCTCGAAGCACCGGAAGTTCAGGTGGAGGTACACCTTTCCAA
CGGCTTGCCGGGGCTGTCCATCGTCGGCTTGCCGGAAGCGGCGGTGAAGGAGAGTCGCGAGCGGGTGCGCAGTGCGCTGC
TCAATGCCGGCTTCGAGTTTCCGGCGCGGCGTATCACCCTCAATCTGGCGCCAGCGGATCTCCCCAAGGAAGGCGGACGC
TTCGACCTGCCCATCGCGCTGGGGATTCTGGTTGCCTCCGGGCAGATACCGGAAGAGGCCGTGGCAGCGATGGAGTGCCT
TGGCGAGCTGGCGCTGGATGGCAGCATCCGTGCCGTGACCGGCGTGCTGCCAGCCGCACTCTGCTGTCGCAAGGCGGGGC
GGACGCTGGTGGTGCCGCGCGGCAATGCCGACGAGGCGGCACTCGCCGAGGAGTTGGAAGTGCTGGCGGTGGGCCATCTG
TTGGAGCTGGTGGCTCACCTGCTGGGGCGCGAGCGCCTCACGCCGCATGTGTGTTCGATCATTCCCCAGGCGCGCCTGCC
GGAGCCCGACCTGAGCGAGGTGCGTGGCCAGCATCAGGCACGCAGGGCATTGGAGATCGCCGCGGCCGGCGGCCACAACC
TGCTGTTCGCTGGTCCGCCGGGCACCGGCAAGACGATGCTGGCCAGTCGCCTGTCCGGCATCTTGCCGCCACTGGGCGAA
GGGGAGGCGCTGGAAGTCGCGGCGGTGCGTTCGGTATGTGGTCTGCCGATCATGGAGCGCTGGGGTCAGCGGCCTTTCCG
CGCCCCGCACCATACGGCCAGTGGGGTCGCGCTGGTGGGAGGTGGCTCCAAGCCGCGTCCGGGCGAGGTGTCGCTGGCGC
ATCATGGCGTGCTGTTTCTGGATGAGCTGGCGGAGTTCGACCGTGGCGTGCTGGAAGTGATGCGCGAGCCGCTGGAGAGT
GGCCGTATCCTGATCTCACGCGCCAGCCATCAACGCCGTTTCCCGGCGCGCTTCCAGCTGGTCGCGGCGATGAACCCCTG
CCCCTGTGGCTACCTCGGTGACAGTCGCCGCAATTGCAGCTGTACCCCGGCGCAGATCCAGCGCTATCAGGCGCGTCTGT
CCGGCCCGTTGCTGGACCGCATCGACCTGCAGGTCGAGGTGCCGGGCCTGCCCGCCGAGGAGCTGACGTCCGCCACCCCC
GGTGAGGCGTCGGCCGGCGTGCGTGAACGAGTGCTGGCCGCTCGCGCGCGCCAATTGGCACGCGGCGGCCTGAATGCCCA
TCTGGATACCCACGCGCTGGAAGCCGCCTGTCAGCTGGAAGACGGCGAGCGCCAGTGGCTGGCCGGTGTGCTGTCACGCC
TCAATCTCTCGGCGCGCGCCTATCACCGGGTGCTGCGTGTCGCGCTGACACTGAGTGATCTGATCGACCAGGACGGCGTG
CAGCGGCCGCAGCTGATGGAGGCCATCGGCTATCGCCAGCTGGACCGCATGATGGGCAGGGACCCGGCACGCCCGGGTGC
CGGCGCACAGCGTGACACTGCTTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-492)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.09	97.471	0.537
comM	Vibrio campbellii strain DS40M4	54.781	97.665	0.535
comM	Glaesserella parasuis strain SC1401	53.543	98.833	0.529
comM	Haemophilus influenzae Rd KW20	52.849	99.027	0.523
comM	Legionella pneumophila str. Paris	51.186	98.444	0.504
comM	Legionella pneumophila strain ERS1305867	51.186	98.444	0.504
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.968	96.498	0.444